PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 266aa MW: 28716.2 Da PI: 6.9404

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G086800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.2e-42	8	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq +l+q + Prupe.4G086800.1.p 8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNAAHREDAVTSLAYEAEARLRDPVYGCVGFISILQGKLKQIQ 98 7****************************************************************************************** PP DUF260 92 aelallke 99 ++l +k+ Prupe.4G086800.1.p 99 TDLYNAKK 106 *9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.728	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-41	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HRVYGASNVA KILNELNAAH 60 REDAVTSLAY EAEARLRDPV YGCVGFISIL QGKLKQIQTD LYNAKKDLSA YIGPQALMIP 120 VFHPSQQTDL NASVPMLGIS NCPPPQHGCG GGQLMQQQQQ LFEAHQQELV RYNVNGMDAA 180 AANSVTGNGF NQMHAAAGTN GVVSAGSLGL GGGFDNNPYN HQMQSQQAAA AAHHQHSLDY 240 QLQAQLMLQP HQAQQSQLKS EGEES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	7	111	10	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	7	111	10	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G086800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007212478.1	0.0	LOB domain-containing protein 6
Swissprot	Q9FKZ3	6e-69	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	M5WIQ1	0.0	M5WIQ1_PRUPE; Uncharacterized protein
STRING	EMJ13677	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-64	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Prupe.4G086800.1.p
Entrez Gene	18779795

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]