PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Prupe.4G066100.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 57aa MW: 6364.03 Da PI: 4.4945

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G066100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	24.5	7e-08	20	41	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +LkrH+++H Prupe.4G066100.1.p 20 TCQECGASFKKPAYLKRHLQSH 41 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.63E-6	15	42	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-6	16	42	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0096	19	41	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.614	19	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	21	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 57 aa Download sequence Send to blast
MEMANEADED GEGEREKSNT CQECGASFKK PAYLKRHLQS HSLEDSTFLT TIIWIS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G066100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016647088.1	1e-16	PREDICTED: transcription factor IIIA-like
TrEMBL	A0A251PGP1	3e-34	A0A251PGP1_PRUPE; Uncharacterized protein
STRING	XP_008222684.1	4e-26	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3069	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-11	transcription factor IIIA

Link Out ? help Back to Top
Phytozome	Prupe.4G066100.1.p