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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Prupe.4G061800.1.p |
| Common Name | PRUPE_ppa008833mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
Trihelix |
| Protein Properties |
Length: 311aa MW: 34690.6 Da PI: 4.9874 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.4G061800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 49.4 | 1.2e-15 | 32 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ + +L++a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ ++k+yk + ++ ++ + + +s++p+f++l+
Prupe.4G061800.1.p 32 CWSEDATSTLVDAWGRRYLELNRGCLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKFEMNRVSSSNGTLTSSWPFFERLD 122
7****************************************99999*********************9988888887788889******98 PP
trihelix 87 a 87
a
Prupe.4G061800.1.p 123 A 123
5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MGDLTDPQMT PSHATATTPS SNPRPMPVRE DCWSEDATST LVDAWGRRYL ELNRGCLRQK 60
DWQEVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKFE MNRVSSSNGT LTSSWPFFER 120
LDALIGSNYK KPSPSPPVAV PLPLGYRKTP SPATVVTAVG LPQKRSASSA AVDEGFFRMN 180
YSAVAAAAAA EAEDDDDEDE DEDDEVNYEV DEEVEMERER DSGGEIGGGG GGEGLKRLAR 240
AIERFGEVYQ RVEAEKLRQM VDLEKQRMQF ANDLEVQRMN MFMDTQVQLE RIKHGKRSGS 300
NAFVHGCERL *
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G58630.1 | 1e-37 | sequence-specific DNA binding transcription factors |
