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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G055600.1.p | ||||||||
Common Name | PRUPE_ppa022010mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 29431.3 Da PI: 5.5187 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 126 | 176 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + k +r++lg+f taeeAa a+++a+++++g Prupe.4G055600.1.p 126 HYRGVRRRP-WGKYAAEIRDsT--R-KGARVWLGTFETAEEAALAYDKAALRIRG 176 8********.**********32..2.24*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.36E-29 | 125 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 125 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.828 | 126 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-37 | 126 | 190 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-23 | 126 | 186 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-14 | 126 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 127 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 150 | 166 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MAVHSDPHAA QVASEAILEN VWASFIGVDG VKEEAKKTTE LSKPWKELPP LDGRGGSMEI 60 LERLPSLGRW ISMGTEAWEE LLDSCVVPGH NMEVSSNVKL EGNGAANAEF EAKVEKRREK 120 VEIMKHYRGV RRRPWGKYAA EIRDSTRKGA RVWLGTFETA EEAALAYDKA ALRIRGSKAN 180 LNFPLETVAK AMGLDCFNIC SSTNVSNSRK RALREWEESV EAMTDGKPAL KRKASMQNML 240 GDEFDVFEFQ DLGSDYLDSL LSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-29 | 125 | 187 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-29 | 125 | 187 | 4 | 66 | ATERF1 |
3gcc_A | 3e-29 | 125 | 187 | 4 | 66 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G055600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418482.1 | 0.0 | ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | A0A251PG90 | 0.0 | A0A251PG90_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225440.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9547 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 3e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G055600.1.p |
Entrez Gene | 18778883 |