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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G053300.1.p | ||||||||
Common Name | PRUPE_ppa008828mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 35868.3 Da PI: 8.4839 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.6 | 7.2e-34 | 58 | 198 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+Ptd+e++ ++L++kv +++ ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Prupe.4G053300.1.p 58 LPAGVKFDPTDQEIL-QHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHte 144 799***********9.99****9999956644322..22222333336**********.666777788******************74444 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Prupe.4G053300.1.p 145 edgsETRWHKTGKTRPVLL-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 198 6555778************.9*************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-38 | 52 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.82 | 58 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-15 | 59 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTWCNDSDDE RAIQIITPPP PPPPPSHNNN EFRNITCPSC GHHIEFQDQA GIHDLPGLPA 60 GVKFDPTDQE ILQHLEAKVL SDTRKLHPLI DEFIPTLEGE NGICYTHPEK LPGVNKDGQI 120 RHFFHRPSKA YTTGTRKRRK VHTEEDGSET RWHKTGKTRP VLLGGAVKGF KKILVLYTNY 180 GRQRKPEKTN WVMHQYHLGN NEEEKDGELV VSKVFYQTQP RQCGSSVKDV PMFDHHKGVN 240 IRSGHGHDPL PIAKKAGLVE YYNPGGGFIN YDHHNLHNQG GHNRESPPQL IPNLVVQGDG 300 SSFIRLTADA SKGKLERK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.5636 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G053300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211644.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-125 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | M5WU50 | 0.0 | M5WU50_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12843 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-125 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G053300.1.p |
Entrez Gene | 18779876 |
Publications ? help Back to Top | |||
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