PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G052600.1.p
Common NamePRUPE_ppa000115mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HB-other
Protein Properties Length: 1766aa    MW: 198111 Da    PI: 5.1002
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G052600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-183388257
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         kR+  t+ qle+Le++++ + yps++ r+eL++klgLt+rq ++WF+ rR k+kk
  Prupe.4G052600.1.p 33 PKRQMKTPFQLETLEKAYALETYPSEAIRAELSEKLGLTDRQLQMWFCHRRLKDKK 88
                        69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-181489IPR009057Homeodomain-like
SuperFamilySSF466891.28E-162089IPR009057Homeodomain-like
PROSITE profilePS5007116.7142989IPR001356Homeobox domain
SMARTSM003892.4E-183193IPR001356Homeobox domain
PfamPF000463.9E-163388IPR001356Homeobox domain
CDDcd000863.19E-143489No hitNo description
SMARTSM005712.0E-21549608IPR018501DDT domain
PROSITE profilePS5082716.943549608IPR018501DDT domain
PfamPF027911.5E-17550605IPR018501DDT domain
PfamPF050662.6E-15731799IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.7E-6953997IPR028942WHIM1 domain
PfamPF156134.2E-1411361208IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1766 aa     Download sequence    Send to blast
MEGASEGENP TKNHENNNSN GKFNNSSEGQ SKPKRQMKTP FQLETLEKAY ALETYPSEAI  60
RAELSEKLGL TDRQLQMWFC HRRLKDKKEG GPAKKQRKSV PTLPEPPIDD LAHGSEPGSD  120
YGSGSGSGSS PFGHAELRNV VSRSGADDVP MRRRYYESPQ SILELRAIAC VEAQLGEPLR  180
EDGPVLGVEF DRLPPDAFGA PIAVAEQQKR AAHALEGKYE RHDAKPNKAT PRALHEYPFL  240
QDHSSIRSDA YGQAAQSHFQ DSPIDGPSAR ASSFAVGNEP LSRVHGVHGH GHVSRVRLLS  300
QQERQAVAFP SPGDDGCVPQ RDSFTNVRVN TQFSDPPTVA PENSNVLSDG QINDSMLRME  360
RKRKSEEARI AKEVEAHEIR IRKELEKQDI LRRKNEERMR KEMERHDRER RKEEERLMRE  420
RQREEERSKR EQKREIERRE KFLQKEYIRA EKRRQKEELR KEREAVRRKA ALEKATARRL  480
AKESMELIED EQLELMELAA ASKGLSSIIC IDLDTLQNLD AFRDSLAAFP PKSVQLKRPF  540
AVQPWINSEE NIGNFLMVWR FLITFADVLE LWPFTLDEFV QAFHDYDSRL LGEIHVALLR  600
LIIKDIEDVA RTPSTGLGVN QNGAANPGGG HPQIVEGAYA WGFDIRNWQQ HLNLLTWPEI  660
FRQLALSAGF GPQLKKRSTA WSYSPDNDEG KGCQDAISNL RNGSAAENAF AIMQEKGLLA  720
PRKSRHRLTP GTVKFAAFHV LSLEGNKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL  780
TRDTKLFERI APSTYRVRAA YRKDPADAEA ILSAARKKIQ IFENGFLAAE DADDVERDDA  840
DEVENDEVER DEDFECDEVD DDPEVDDLAT PSVAKKSPDD YNEVITFSEN GKDLCNDVAL  900
NVQNEFENDV SSSPVSGSKD ANCPSASSKQ CVSGADISAS NLDQENMEID ESKSGESWVQ  960
GLTEGEYSDL SVEERLNGLV TLIGVANEGN SIRVVLEDRL EAANALKKQM WAEAQLDKSR  1020
LKEENVGKLD FPSFVGGKSE TQVIGVEDGQ SPVRDVDNRN IEASPGTAEN QKSIHGSQGV  1080
QNQLNGLPVE RTLGAQDISM GPDNFLSQQL AYASKRSRSQ LKSYIAHRAE EMYAYRSLPL  1140
GQDRRHNRYW QFVASASSND PGSGRIFIEL NNGSWRLIDT EEAFDALLTS LDTRGIRESH  1200
LRLMLQKIEA SFKDNVRKTS HCPNSAGPSK NRVKNEADMD SSPDCPSGFD SPGSTVCALN  1260
SDTAETSSSF RIELDRNEAE KRAALRRYQD FQKWMWKECF SSSTFCAMKY AKKRCRSLFD  1320
VCDFCLSCYY FEDSHCAFCH QTFSAFYANF NFSEHVIQCK EKRKLEPWDS HMPCTSLPLG  1380
RRLLKALIAH IEVSIPPEAL QSFWTEDRRK TWGGKLNASS STEELLQILT LLETAVKRDF  1440
LSSNFAATEE LLGTSKQSEV FVPDFLDSGS VPLLPWIPHT TAAVALRLHE MDSSITHIQL  1500
EKAEPNGDKE VKEYLKLPMR LAPLKESEQT EVGHNEYIRE ENNTHLKSAR NSFRRGRGGR  1560
EQGRGKKWQR KVNNSKSGAS RQKGSGNLSQ GFRPVGKRTQ GQGSARGRRT VRKRRTKDRV  1620
VEGTPLGRMT DVRSSPESGG DSPRNLGEEW DDEKIDMIHM KGDEQREGYE QAEALESEDD  1680
DQAVGYEQGN WETGFDGTSS GWHEGLLEAS DEDMDASEDD NNGIEEVRDE DSEGDVDMSD  1740
ASDEIQNKIT NDDGSDSAVS DDYSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188RRLKDKKE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G052600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417201.10.0homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A251PG330.0A0A251PG33_PRUPE; Uncharacterized protein
STRINGEMJ158080.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1