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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Prupe.4G040900.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
| Family |
NAC |
| Protein Properties |
Length: 350aa MW: 38721.1 Da PI: 10.2561 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.4G040900.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 98.3 | 1.2e-30 | 42 | 119 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ ++++vg+kk Lvfy g+ pkg k++W+mheyrl
Prupe.4G040900.2.p 42 TFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSiGNQKVGVKKALVFYGGKPPKGIKSNWIMHEYRL 119
44789*************************************9989999***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MKSWWSIISR KRPPPLLYRS PSSPRWTCTS LIHGSYQVRK ATFGEQEWYF FSPRDRKYPN 60
GARPNRAATS GYWKATGTDK PILTSIGNQK VGVKKALVFY GGKPPKGIKS NWIMHEYRLV 120
NNNNNFSKPP DASNKKASLR LDDWVLCRIY KKNNAQRPMM DEDSSNNSMD GMFAHPSSIL 180
PAPPPPPPQP KHTTNYTALL ENDDHEGFFE GILSSNDQQG SHSHHHHQHH QHHQHHHDQF 240
GGISTSSSKS NLPVKRPLSS SFWNDAGSMG TAAAAATTSS SSKRFHADLN SGISATAAGG 300
VDESNSSFVS MLNQLPQGTA PFHSNALLGS LGDGVLRQQF QHPSMNWNS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-47 | 40 | 155 | 65 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-47 | 40 | 155 | 65 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-47 | 40 | 155 | 65 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-47 | 40 | 155 | 65 | 168 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-47 | 40 | 155 | 65 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 4e-47 | 40 | 155 | 65 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KR822709 | 0.0 | KR822709.1 Prunus persica NAC transcription factor NAC2 (NAC2) mRNA, complete cds. |
