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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G040900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 38721.1 Da PI: 10.2561 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.3 | 1.2e-30 | 42 | 119 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ ++++vg+kk Lvfy g+ pkg k++W+mheyrl Prupe.4G040900.2.p 42 TFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSiGNQKVGVKKALVFYGGKPPKGIKSNWIMHEYRL 119 44789*************************************9989999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.393 | 1 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.23E-38 | 40 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-15 | 45 | 119 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MKSWWSIISR KRPPPLLYRS PSSPRWTCTS LIHGSYQVRK ATFGEQEWYF FSPRDRKYPN 60 GARPNRAATS GYWKATGTDK PILTSIGNQK VGVKKALVFY GGKPPKGIKS NWIMHEYRLV 120 NNNNNFSKPP DASNKKASLR LDDWVLCRIY KKNNAQRPMM DEDSSNNSMD GMFAHPSSIL 180 PAPPPPPPQP KHTTNYTALL ENDDHEGFFE GILSSNDQQG SHSHHHHQHH QHHQHHHDQF 240 GGISTSSSKS NLPVKRPLSS SFWNDAGSMG TAAAAATTSS SSKRFHADLN SGISATAAGG 300 VDESNSSFVS MLNQLPQGTA PFHSNALLGS LGDGVLRQQF QHPSMNWNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 40 | 155 | 65 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 40 | 155 | 65 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 40 | 155 | 65 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 40 | 155 | 65 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-47 | 40 | 155 | 65 | 168 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 40 | 155 | 65 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G040900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR822709 | 0.0 | KR822709.1 Prunus persica NAC transcription factor NAC2 (NAC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211453.1 | 0.0 | NAC transcription factor 25 | ||||
TrEMBL | A0A251PFK6 | 0.0 | A0A251PFK6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12652 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 5e-68 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G040900.2.p |