 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Prupe.4G040900.1.p |
| Common Name | PRUPE_ppa007314mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
| Family |
NAC |
| Protein Properties |
Length: 374aa MW: 41068.5 Da PI: 8.8603 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.4G040900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 171.2 | 3.3e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
Prupe.4G040900.1.p 16 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 105
79****************************.89***************8888999************************************ PP
NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+l++ ++++vg+kk Lvfy g+ pkg k++W+mheyrl
Prupe.4G040900.1.p 106 ILTSiGNQKVGVKKALVFYGGKPPKGIKSNWIMHEYRL 143
**9989999***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MESTDSSSGS QAHPQLPPGF RFHPTDEELV VHYLKKKAAS APLPVTIIAE VDLYKFDPWE 60
LPSKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTSI GNQKVGVKKA 120
LVFYGGKPPK GIKSNWIMHE YRLVNNNNNF SKPPDASNKK ASLRLDDWVL CRIYKKNNAQ 180
RPMMDEDSSN NSMDGMFAHP SSILPAPPPP PPQPKHTTNY TALLENDDHE GFFEGILSSN 240
DQQGSHSHHH HQHHQHHQHH HDQFGGISTS SSKSNLPVKR PLSSSFWNDA GSMGTAAAAA 300
TTSSSSKRFH ADLNSGISAT AAGGVDESNS SFVSMLNQLP QGTAPFHSNA LLGSLGDGVL 360
RQQFQHPSMN WNS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-75 | 16 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-75 | 16 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-75 | 16 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-75 | 16 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 2e-75 | 16 | 179 | 17 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 2e-75 | 16 | 179 | 17 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KR822709 | 0.0 | KR822709.1 Prunus persica NAC transcription factor NAC2 (NAC2) mRNA, complete cds. |
