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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G040900.1.p | ||||||||
Common Name | PRUPE_ppa007314mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 41068.5 Da PI: 8.8603 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.2 | 3.3e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Prupe.4G040900.1.p 16 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 105 79****************************.89***************8888999************************************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +l++ ++++vg+kk Lvfy g+ pkg k++W+mheyrl Prupe.4G040900.1.p 106 ILTSiGNQKVGVKKALVFYGGKPPKGIKSNWIMHEYRL 143 **9989999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-64 | 9 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.051 | 16 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MESTDSSSGS QAHPQLPPGF RFHPTDEELV VHYLKKKAAS APLPVTIIAE VDLYKFDPWE 60 LPSKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTSI GNQKVGVKKA 120 LVFYGGKPPK GIKSNWIMHE YRLVNNNNNF SKPPDASNKK ASLRLDDWVL CRIYKKNNAQ 180 RPMMDEDSSN NSMDGMFAHP SSILPAPPPP PPQPKHTTNY TALLENDDHE GFFEGILSSN 240 DQQGSHSHHH HQHHQHHQHH HDQFGGISTS SSKSNLPVKR PLSSSFWNDA GSMGTAAAAA 300 TTSSSSKRFH ADLNSGISAT AAGGVDESNS SFVSMLNQLP QGTAPFHSNA LLGSLGDGVL 360 RQQFQHPSMN WNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-75 | 16 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-75 | 16 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-75 | 16 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-75 | 16 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-75 | 16 | 179 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-75 | 16 | 179 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-75 | 16 | 179 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G040900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR822709 | 0.0 | KR822709.1 Prunus persica NAC transcription factor NAC2 (NAC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211453.1 | 0.0 | NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 1e-113 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | M5WFT2 | 0.0 | M5WFT2_PRUPE; NAC transcription factor NAC2 | ||||
STRING | EMJ12652 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-104 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G040900.1.p |
Entrez Gene | 18778845 |
Publications ? help Back to Top | |||
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