PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G039700.1.p
Common NamePRUPE_ppa005047mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 481aa    MW: 53518.2 Da    PI: 10.3713
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G039700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07946233
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......T CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......k 33
                         rW t++++ll+ a+ ++G+++W+ +a+++        
  Prupe.4G039700.1.p  9 SRWGTWLELLLAGAILRHGTRDWNQVAAELRartacpY 46
                        59*****************************6544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.0E-61060IPR001005SANT/Myb domain
SuperFamilySSF473705.89E-20262375IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.7E-18268376IPR001487Bromodomain
SMARTSM002974.8E-18271375IPR001487Bromodomain
PfamPF004392.0E-13280359IPR001487Bromodomain
PROSITE profilePS5001410.76286356IPR001487Bromodomain
CDDcd043699.80E-8286370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MGAEVIGGSR WGTWLELLLA GAILRHGTRD WNQVAAELRA RTACPYTFTP EVCKAKYNDL  60
RKRYSGCKAW FEDLRKKRME ELRQALKKSE DSIGSLESKL ETLKAEKGED GYNNYGSTQT  120
ESPVAYQKSV GHYPSAKEAF KDEPSAGSFT CEALTSCSPE CQIPVTESTE ETETKREASH  180
SSEHEKISSM EKLVGTLYVG VGLGGNLRKR RGKRKRKDCT SRDVKEASIG ESRLLDSPDA  240
VTALRCIENS NSECREEFAS SGAGDCNRSS TKNETDHLWN VFNSFLEHKS ASVFRHRLDS  300
QKRRRYKKLI HRHMDFDTIR SRISNHSVMS VKELFRDLLL LANNALVFYS KNTREYESAL  360
LLRDLTTKTL RQHLKDSSGK ATSANLSSNA LVCNPPGKPR SARPAGNRRL SVKATHAGNA  420
AAKTSNRSKK PSHANADSSP SVESFAVTKK TSGHPRKVGR RSVSQQNVTP VKGRKRGRTK  480
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16077RKRYSGCKAWFEDLRKKR
2209217RRGKRKRKD
3300307QKRRRYKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G039700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212081.10.0uncharacterized protein LOC18778731 isoform X1
TrEMBLM5X2I90.0M5X2I9_PRUPE; Uncharacterized protein
STRINGEMJ132800.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.12e-18DNA-binding bromodomain-containing protein