PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TALE

Protein Properties

Length: 331aa MW: 37080.7 Da PI: 6.789

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G015200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	1.9e-09	257	291	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Prupe.4G015200.1.p 257 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 291 569*****************************885 PP
2	ELK	41.3	3.3e-14	211	232	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Prupe.4G015200.1.p 211 ELKGQLLRKYSGYLGSLKQEFM 232 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	3.7E-19	68	112	IPR005540	KNOX1
Pfam	PF03790	3.5E-22	70	108	IPR005540	KNOX1
SMART	SM01256	7.9E-27	122	173	IPR005541	KNOX2
Pfam	PF03791	2.0E-21	126	172	IPR005541	KNOX2
SMART	SM01188	2.8E-8	211	232	IPR005539	ELK domain
PROSITE profile	PS51213	11.174	211	231	IPR005539	ELK domain
Pfam	PF03789	5.3E-11	211	232	IPR005539	ELK domain
PROSITE profile	PS50071	12.989	231	294	IPR001356	Homeobox domain
SMART	SM00389	7.4E-13	233	298	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-20	233	309	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	236	296	IPR009057	Homeodomain-like
CDD	cd00086	5.42E-12	243	295	No hit	No description
Pfam	PF05920	5.7E-17	251	290	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	269	292	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MQTQTPLLRF SFPSYLHPTT TAIAAPPLSF STDHHPNNNN NNHPAAAAAC YFMDNNNSNH 60 DGSSSSSSSV KAKIMAHPHY HRLLASYINC QKVGAPPEVV ARLEEACASA ASIGQMMSSS 120 SGSGCLGEDP ALDQFMEAYC EMLTKYEQEL SKPFKEAMIF LQRIESQFKA LTLSSSSDSA 180 VCGDGLDRNG SSEEEVDVNN NFIDPQAEDR ELKGQLLRKY SGYLGSLKQE FMKKRKKGKL 240 PKEARQQLLD WWSRHYKWPY PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF 300 VVMDATHPGH YYMDTVLGNP FPMDISPTLL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	235	LKQEFMKKRK
2	232	236	KKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
Uniprot	TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G015200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ364232	0.0	DQ364232.1 Prunus dulcis homeodomain protein Kn1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007213815.2	0.0	LOW QUALITY PROTEIN: homeobox protein knotted-1-like LET6
Swissprot	P46608	1e-148	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	M5WMU5	0.0	M5WMU5_PRUPE; Uncharacterized protein
STRING	EMJ15014	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-142	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Prupe.4G015200.1.p
Entrez Gene	18778917

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]