PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.3G309800.1.p

Common Name

PRUPE_ppa024399mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 709aa MW: 78477.6 Da PI: 6.1483

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G309800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	437.8	7.9e-134	343	707	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsP 89 lv+lLl+cAeav+++d+ la+++L +l+ ++p gd+mqR+a++fteAL+arla +++ ++a +p + + ns e l+++++ ++++P Prupe.3G309800.1.p 343 LVHLLLACAEAVAKEDFMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAAtlTTNPAASAPKPFSPFPPNSLEILKIYQIVYQACP 433 68**************************************************943333444444444444567************ PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 ++kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+ e+++etg+ L+++A +l+vpfef++ Prupe.3G309800.1.p 434 YIKFAHFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARTGGAPFLRITGVGP----CIEAVKETGRCLTELALSLHVPFEFHA 520 ********************************************************....*********************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 v ++ledl++++++ + gEalaVn v +lhr++ ++ +vL ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl Prupe.3G309800.1.p 521 -VGEQLEDLKPHMFNRRIGEALAVNTVNRLHRVP------GNYLGNVLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSL 604 .7***************************9......444557***************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +a++p++s +r+kvE+ ++++ei+n+vacegaer+erhe+lekWr+ +e+ GFk+v+ls +a++q k ll ++ dgyr+ e++g+l+lgW Prupe.3G309800.1.p 605 DATFPPDSAQRAKVEQYIFAQEIRNIVACEGAERTERHERLEKWRKVMESKGFKSVALSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGW 695 *************************************************************************************** PP GRAS 363 kdrpLvsvSaWr 374 +dr+++++SaWr Prupe.3G309800.1.p 696 QDRSIMAASAWR 707 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.203	317	687	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-131	343	707	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MMNSLCGSMG SIKSEISCTS DLKPPSPNES TTMSISMSES KKTTTPPSSE MEQSSLTPPS 60 LNFPTLKFEL DGDVEVQSPD HSIWESLFSE QFDTDFMVLS PVPNNMPDSP QPGSSLSAAH 120 NTYNYNYAQS MQGQSLSGCS PPRFSPHLGA FSSTHNPKGK GLSPLRRVFN SPVNQYMQPA 180 DQNMQSMPPA SIEDFLDDYQ RDSFIAAYQN PTTSSSKMSG TSSQSYNPHD MPTSSTVPAA 240 PLDCLPMQNS SRFSRSASET SLVTAGNSQM TQESRASAYQ QMGSNCGAPL SQQLQQERQQ 300 EKQQQQQPLM HPIKHQLHHN LNYMAPNLPM APEQQEQDSG LQLVHLLLAC AEAVAKEDFM 360 LARRYLHHLN RVVTPLGDSM QRVASCFTEA LSARLAATLT TNPAASAPKP FSPFPPNSLE 420 ILKIYQIVYQ ACPYIKFAHF TANQAIFEAF ESEERVHVID LDILQGYQWP AFMQALAART 480 GGAPFLRITG VGPCIEAVKE TGRCLTELAL SLHVPFEFHA VGEQLEDLKP HMFNRRIGEA 540 LAVNTVNRLH RVPGNYLGNV LAMIRDQAPN IVTLVEQEAS HNGPYFLGRF LEALHYYSAI 600 FDSLDATFPP DSAQRAKVEQ YIFAQEIRNI VACEGAERTE RHERLEKWRK VMESKGFKSV 660 ALSANAVTQS KILLGLYSCD GYRMTEDKGC LLLGWQDRSI MAASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MMNSLCGSMG SIKSEISCTS DLKPPSPNES TTMSISMSES KKTTTPPSSE MEQSSLTPPS  60
LNFPTLKFEL DGDVEVQSPD HSIWESLFSE QFDTDFMVLS PVPNNMPDSP QPGSSLSAAH  120
NTYNYNYAQS MQGQSLSGCS PPRFSPHLGA FSSTHNPKGK GLSPLRRVFN SPVNQYMQPA  180
DQNMQSMPPA SIEDFLDDYQ RDSFIAAYQN PTTSSSKMSG TSSQSYNPHD MPTSSTVPAA  240
PLDCLPMQNS SRFSRSASET SLVTAGNSQM TQESRASAYQ QMGSNCGAPL SQQLQQERQQ  300
EKQQQQQPLM HPIKHQLHHN LNYMAPNLPM APEQQEQDSG LQLVHLLLAC AEAVAKEDFM  360
LARRYLHHLN RVVTPLGDSM QRVASCFTEA LSARLAATLT TNPAASAPKP FSPFPPNSLE  420
ILKIYQIVYQ ACPYIKFAHF TANQAIFEAF ESEERVHVID LDILQGYQWP AFMQALAART  480
GGAPFLRITG VGPCIEAVKE TGRCLTELAL SLHVPFEFHA VGEQLEDLKP HMFNRRIGEA  540
LAVNTVNRLH RVPGNYLGNV LAMIRDQAPN IVTLVEQEAS HNGPYFLGRF LEALHYYSAI  600
FDSLDATFPP DSAQRAKVEQ YIFAQEIRNI VACEGAERTE RHERLEKWRK VMESKGFKSV  660
ALSANAVTQS KILLGLYSCD GYRMTEDKGC LLLGWQDRSI MAASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-97	334	706	9	377	Protein SCARECROW
5b3h_D	2e-97	334	706	9	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G309800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020416149.1	0.0	DELLA protein RGL1
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	M5WZR2	0.0	M5WZR2_PRUPE; Uncharacterized protein
STRING	EMJ18716	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9470	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	5e-95	RGA-like 1

Link Out ? help Back to Top
Phytozome	Prupe.3G309800.1.p
Entrez Gene	18781877

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]