PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G309800.1.p
Common NamePRUPE_ppa024399mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 709aa    MW: 78477.6 Da    PI: 6.1483
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G309800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.87.9e-1343437071374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsP 89 
                         lv+lLl+cAeav+++d+ la+++L +l+  ++p gd+mqR+a++fteAL+arla   +++  ++a +p +  + ns e l+++++ ++++P
  Prupe.3G309800.1.p 343 LVHLLLACAEAVAKEDFMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAAtlTTNPAASAPKPFSPFPPNSLEILKIYQIVYQACP 433
                         68****************************************************943333444444444444567**************** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         ++kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+      e+++etg+ L+++A +l+vpfef++
  Prupe.3G309800.1.p 434 YIKFAHFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARTGGAPFLRITGVGP----CIEAVKETGRCLTELALSLHVPFEFHA 520
                         ************************************************************....*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v ++ledl++++++ + gEalaVn v +lhr++       ++  +vL ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl
  Prupe.3G309800.1.p 521 -VGEQLEDLKPHMFNRRIGEALAVNTVNRLHRVP------GNYLGNVLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSL 604
                         .7*******************************9......444557********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +a++p++s +r+kvE+ ++++ei+n+vacegaer+erhe+lekWr+ +e+ GFk+v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW
  Prupe.3G309800.1.p 605 DATFPPDSAQRAKVEQYIFAQEIRNIVACEGAERTERHERLEKWRKVMESKGFKSVALSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGW 695
                         ******************************************************************************************* PP

                GRAS 363 kdrpLvsvSaWr 374
                         +dr+++++SaWr
  Prupe.3G309800.1.p 696 QDRSIMAASAWR 707
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.203317687IPR005202Transcription factor GRAS
PfamPF035142.7E-131343707IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MMNSLCGSMG SIKSEISCTS DLKPPSPNES TTMSISMSES KKTTTPPSSE MEQSSLTPPS  60
LNFPTLKFEL DGDVEVQSPD HSIWESLFSE QFDTDFMVLS PVPNNMPDSP QPGSSLSAAH  120
NTYNYNYAQS MQGQSLSGCS PPRFSPHLGA FSSTHNPKGK GLSPLRRVFN SPVNQYMQPA  180
DQNMQSMPPA SIEDFLDDYQ RDSFIAAYQN PTTSSSKMSG TSSQSYNPHD MPTSSTVPAA  240
PLDCLPMQNS SRFSRSASET SLVTAGNSQM TQESRASAYQ QMGSNCGAPL SQQLQQERQQ  300
EKQQQQQPLM HPIKHQLHHN LNYMAPNLPM APEQQEQDSG LQLVHLLLAC AEAVAKEDFM  360
LARRYLHHLN RVVTPLGDSM QRVASCFTEA LSARLAATLT TNPAASAPKP FSPFPPNSLE  420
ILKIYQIVYQ ACPYIKFAHF TANQAIFEAF ESEERVHVID LDILQGYQWP AFMQALAART  480
GGAPFLRITG VGPCIEAVKE TGRCLTELAL SLHVPFEFHA VGEQLEDLKP HMFNRRIGEA  540
LAVNTVNRLH RVPGNYLGNV LAMIRDQAPN IVTLVEQEAS HNGPYFLGRF LEALHYYSAI  600
FDSLDATFPP DSAQRAKVEQ YIFAQEIRNI VACEGAERTE RHERLEKWRK VMESKGFKSV  660
ALSANAVTQS KILLGLYSCD GYRMTEDKGC LLLGWQDRSI MAASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-973347069377Protein SCARECROW
5b3h_D2e-973347069377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G309800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416149.10.0DELLA protein RGL1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLM5WZR20.0M5WZR2_PRUPE; Uncharacterized protein
STRINGEMJ187160.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-95RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]