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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G293200.3.p | ||||||||
Common Name | PRUPE_ppa006948mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 42249.9 Da PI: 4.88 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101 | 1.6e-31 | 53 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikev....diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 lp+G++F+P+d el+ e+L++k+ + + +e+i+++ +iy+ +P +Lp k++ ++ +fF+k+ ++yatg+rk+r+ Prupe.3G293200.3.p 53 LPAGVKFDPSDAELL-EHLAAKCGVGNskphmfI--DEFIPTLagdnGIYYDHPANLP-GSKNDGSSFHFFHKTINAYATGHRKRRKvdch 139 799************.999999876664555332..333443322126**********.556778899******************86888 PP NAM 78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ +W++tgk+k++++ +g ++g+kk++v+y +++ +k+ k++Wvmh+y+l Prupe.3G293200.3.p 140 rslaAEHVRWHKTGKTKPIME-NGVQKGCKKIMVLYksSKKGSKADKSNWVMHQYHL 195 888877999************.999***********4334667888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-36 | 38 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.552 | 53 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-13 | 54 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MAWLINSRGL ANKVKNAALS SAYQIKDCGA NRDCPNCHFV IDNSDVLSEW PGLPAGVKFD 60 PSDAELLEHL AAKCGVGNSK PHMFIDEFIP TLAGDNGIYY DHPANLPGSK NDGSSFHFFH 120 KTINAYATGH RKRRKVDCHR SLAAEHVRWH KTGKTKPIME NGVQKGCKKI MVLYKSSKKG 180 SKADKSNWVM HQYHLGTEDG EKEGEYVVSK IFYQQHKQSE TNDNNLVIED DVNALGTSPR 240 TPITSAPNPP RPGKSVGCDD VPDEDVLDSS AKEAELVPGT QFGDNIGDTT WLAGESQADE 300 NCDLDCLEDT LLCKETFDSS TLLNGSFADG ISSTDFPSNI YGVTGNSSTS CGIGDLENID 360 LGTPPDFQLA DLQFCSQDSL LGWLDRL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G293200.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020415309.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X3 | ||||
Swissprot | Q6NQK2 | 2e-83 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A251Q7A9 | 0.0 | A0A251Q7A9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16704 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 1e-95 | NAC domain containing protein 85 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G293200.3.p |
Entrez Gene | 18782294 |