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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G268400.1.p | ||||||||
Common Name | PRUPE_ppa016710mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 399aa MW: 44493.7 Da PI: 7.3867 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.4 | 4.9e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + pGfrFhPtdeelv +yL++k++++ l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++ Prupe.3G268400.1.p 14 MLPGFRFHPTDEELVGFYLRRKIQQRLLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 103 579***************************.89***************9888999************************************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl Prupe.3G268400.1.p 104 IYSSeGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 ***956677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-57 | 13 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.884 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MDEKNDMDKI DDVMLPGFRF HPTDEELVGF YLRRKIQQRL LPIELIKQVD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPSLSESAPP PKKLLDKSLP ANDAWAICRI FKKTNSMAQR 180 ALSHSWGSPF PEPTAASGLL NQGAHCTQFS SENMSCTTDI GSSIQFWSNN DLQQASNASY 240 SAFDTLPYKP INPTGSKPSI FDADQFPNGF MFSPVEMSGP ISPALIGDLS NTTGSIDFDG 300 SQQQQFSGFS INLSQNQMQG NMETRENEGG FRKNLSSSTS HANNNNNNNN GQWGSIRPIA 360 FPFSLASDDD AWKPTLPSDS PPCPSDMSTS YSTNKCYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-52 | 16 | 176 | 17 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G268400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414708.1 | 0.0 | protein FEZ | ||||
Swissprot | Q9ZVH0 | 1e-103 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A251Q9C6 | 0.0 | A0A251Q9C6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ18824 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-102 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G268400.1.p |
Entrez Gene | 18782041 |
Publications ? help Back to Top | |||
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