PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G249300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 322aa    MW: 36217.9 Da    PI: 9.3733
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G249300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  Prupe.3G249300.1.p  9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59
                        79***********************************************96 PP
2K-box94.71.5e-3175173199
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         y++++ +  +e + + ++ e+ kL ++ie Lqr++Rh+ GedLesLsl+eLq+Le qLe++lk+iR++Kn+l++e+i+el kk+k+lqe+n
  Prupe.3G249300.1.p  75 YAEQQLTTDSEPQGSCWSLEYPKLAARIEVLQRKLRHFTGEDLESLSLRELQNLELQLETALKRIRTRKNQLMHESISELHKKQKALQEQN 165
                         567778888999999**************************************************************************** PP

               K-box  92 kaLrkkle 99 
                         ++L kkl+
  Prupe.3G249300.1.p 166 NSLAKKLK 173
                         *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.001161IPR002100Transcription factor, MADS-box
CDDcd002657.27E-42279No hitNo description
SuperFamilySSF554551.7E-33284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-30323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2787172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.45188180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRGKVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFST KGKLFEYSSD  60
SSMESILERY DQYSYAEQQL TTDSEPQGSC WSLEYPKLAA RIEVLQRKLR HFTGEDLESL  120
SLRELQNLEL QLETALKRIR TRKNQLMHES ISELHKKQKA LQEQNNSLAK KLKLKENENM  180
LEVEHDGQGR QVEQHQSNQA AHNSSTLLLM PPPPPQPPST PALLASLTIG FSLSLSLSLS  240
LLMIQLTNIW VTCKKKASIL RLYANIDAVG ESRQEEGWKM VMIMTEELKL GRPLLLTHSC  300
QCGCIAISTN NGLAGRPAIL K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
6bz1_A2e-21174173MEF2 CHIMERA
6bz1_B2e-21174173MEF2 CHIMERA
6bz1_C2e-21174173MEF2 CHIMERA
6bz1_D2e-21174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G249300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3475460.0KP347546.1 Prunus pseudocerasus cauliflower A-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020415441.11e-166truncated transcription factor CAULIFLOWER A
SwissprotD7SMN64e-94FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A251Q5760.0A0A251Q576_PRUPE; Uncharacterized protein
STRINGEMJ170431e-139(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.18e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]