PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G248100.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 325aa    MW: 35752.2 Da    PI: 5.0924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G248100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.3e-183786255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+e E+rRR++iN++f+ Lr+l+Pk+    ++K +Ka+ L +++eYI+ Lq
  Prupe.3G248100.3.p 37 RSKHSETEQRRRSKINERFQMLRDLIPKN----DQKRDKASFLLEVIEYIQFLQ 86
                        899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.3E-233294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-193295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-173389No hitNo description
PROSITE profilePS5088817.2183585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-153786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-124191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKASKGHHD EFEDDDEESH GGNLAVKVEG QGREKNRSKH SETEQRRRSK INERFQMLRD  60
LIPKNDQKRD KASFLLEVIE YIQFLQEKVN LYEGYQGWSP EPTKLMPWKN HNRPGENFVD  120
QSQVMNNGSG HENNAVVSPA MLPNTQNSVE SDLGSGVVYK ALDHIPGLAT RSVPNVQQQN  180
IFDPIGSVGL PTQPLQESIS DAENMTSNPP YQLWQGITST TASDDKLKKQ DENSGSGSIS  240
SAYSQGVLNN LTQALQSSGV DLSQASISVQ INVGSRVDSG LTSMASSSKA QLNQSLNNQM  300
TQTQVSSCDE DFEPAHKRFR TGES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229DKLKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G248100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894140.0KP689414.1 Prunus pseudocerasus isolate CL6922.1 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215702.20.0transcription factor BIM2 isoform X1
RefseqXP_020414984.10.0transcription factor BIM2 isoform X1
RefseqXP_020414985.10.0transcription factor BIM2 isoform X1
TrEMBLA0A251Q5540.0A0A251Q554_PRUPE; Uncharacterized protein
STRINGXP_008230307.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-52BES1-interacting Myc-like protein 2