 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Prupe.3G236200.1.p |
Common Name | PRUPE_ppa009213mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
Family |
LBD |
Protein Properties |
Length: 303aa MW: 32408.6 Da PI: 7.8678 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.3G236200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 101 | 1.1e-31 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
Prupe.3G236200.1.p 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94
6****************************************************************************************** PP
DUF260 87 leqlkaelallkee 100
l+q+++e++l +++
Prupe.3G236200.1.p 95 LCQAAVEAVLKGQP 108
*******9998876 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGQPIT SITSEAAADG 120 HGPPLKAYDI RHVSKDENSA ASNEPKQAKT RYRFKRSVVK PKASKVGSGS GSGADDSAKP 180 SCAGCCADEF NRSTSHESSL SHQSEAAANV DGESKETESM VSSETAEAEL LFRPEPESAR 240 KRSEPVQEGE LALELTLGLE PQSRAHHVVP VKKRRIDAYG LGGRSSADDG ACKMELGLDL 300 VA*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |