PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G202000.3.p | ||||||||
Common Name | PRUPE_ppa004905mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 487aa MW: 52765.2 Da PI: 6.6388 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91 | 9.5e-29 | 113 | 170 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK vkg+ + rsYYrCt+++Cpvk++ver++ ++++++++Y geH h+k Prupe.3G202000.3.p 113 EDGYHWRKYGQKLVKGNAYVRSYYRCTHPKCPVKRQVERTH-NGQITDTVYFGEHGHPK 170 8***************************************9.***************85 PP | |||||||
2 | WRKY | 104 | 8.5e-33 | 282 | 340 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d kvv+ tYeg+H+h+ Prupe.3G202000.3.p 282 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERASHDSKVVIATYEGQHDHD 340 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-25 | 105 | 170 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.517 | 107 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-23 | 111 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-31 | 112 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-23 | 113 | 169 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-35 | 268 | 342 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-29 | 274 | 342 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.244 | 277 | 342 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-38 | 282 | 341 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.1E-26 | 283 | 339 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MISLGEPGTD KIASDIVPKK ESSNSEIHAP HQNPDNGICP LQSDHRGNVQ SLIPEKSLQL 60 PDGVGTASQS NQEGSVTSLT SEKAPQTPET SALVLRSGQE GSTPSTARER GLEDGYHWRK 120 YGQKLVKGNA YVRSYYRCTH PKCPVKRQVE RTHNGQITDT VYFGEHGHPK AQVSVPVAVS 180 FLVSIVEERP EELLLTGVEG KPSDVHGHTS NQIEPVDPSQ LSTVADNEGV QRVLSQSNRT 240 RDGDPDSKRQ KKEKHNGNSI PVDKPAGEPR VVVQTMSEAD IVNDGYRWRK YGQKLVKGNP 300 NPRSYYRCSN PGCPVKKHVE RASHDSKVVI ATYEGQHDHD MPPTRTVTHN AAASNVITTA 360 RNGESGTTSD GNAVCHDTSP KHEDKPNKQL NVEPRTKSSD VAGCDMVVDS ALGPERKLNE 420 QVVGKACTTE ESDAPDIIVP RANELQNGES GIKSEGNNAC IDTVVHGNLC PESNSPEQKN 480 PKAEPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-37 | 112 | 343 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.6848 | 1e-96 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G202000.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215284.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_020414488.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_020414489.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_020414490.1 | 0.0 | WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 1e-86 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | M5X4P5 | 0.0 | M5X4P5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16483 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 9e-91 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G202000.3.p |
Entrez Gene | 18782207 |
Publications ? help Back to Top | |||
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