PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 693aa MW: 79878.6 Da PI: 6.2398

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G198400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.6	2.3e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +w+v+++++ HnHe Prupe.3G198400.2.p 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVMQWYVSQFSNVHNHE 160 69******************8888.**************************************998766779*********** PP FAR1 89 la 90 l Prupe.3G198400.2.p 161 LL 162 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-22	71	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-23	294	387	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.693	566	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-7	571	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-4	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MAMKPSNNIW IRRQQCPCGD WKCYIQYEGD DLGSVSSQHV KSETTPSSSS SEAVFTPYVG 60 QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRERKSVRCG CDAKLYLTKE IVDGVMQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEVD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLNEK 240 RENDMLELLE ACKAMTGRDP DFVYDYTIDE NEKVENIAWS FGDSIRAYTI FGDVVAFDTS 300 YRSVTYGLLL GVWFGIDNHG KAIFLGCVLL QDESSHSFAW ALQAFMRFMR GRHPQTVLTD 360 IDSGLRDAIA RELPNTKHVL CIWHILSKIS SWFSLPLGSQ YENFKTEFDM LSQLESVEDF 420 EHQWNILVAR FGLVSDKHIA LLYSYRASWT FSYIRSYFLA RTLTAEFSLS LESFLKRILN 480 GQTCLQVFFE QVSIAANLEN QTREGMQYMH VKTGMPLEEH ARNILTPYAF NVLQHEIVLS 540 VQYATTEMAN GSYLVRHYKK LEGECLVIWM PDDEQIHCSC KEFEHSGILC RHSLRVLVVK 600 NYFQLPEKYF LLRWRVESSL VSVDDQNAQI SSDDCAQAFH SLTASLLTES LISKDRFNYV 660 HNELTSLLEH VRNMPVIDEY AANAAANNIS ES*

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MAMKPSNNIW IRRQQCPCGD WKCYIQYEGD DLGSVSSQHV KSETTPSSSS SEAVFTPYVG  60
QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRERKSVRCG CDAKLYLTKE IVDGVMQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEVD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLNEK  240
RENDMLELLE ACKAMTGRDP DFVYDYTIDE NEKVENIAWS FGDSIRAYTI FGDVVAFDTS  300
YRSVTYGLLL GVWFGIDNHG KAIFLGCVLL QDESSHSFAW ALQAFMRFMR GRHPQTVLTD  360
IDSGLRDAIA RELPNTKHVL CIWHILSKIS SWFSLPLGSQ YENFKTEFDM LSQLESVEDF  420
EHQWNILVAR FGLVSDKHIA LLYSYRASWT FSYIRSYFLA RTLTAEFSLS LESFLKRILN  480
GQTCLQVFFE QVSIAANLEN QTREGMQYMH VKTGMPLEEH ARNILTPYAF NVLQHEIVLS  540
VQYATTEMAN GSYLVRHYKK LEGECLVIWM PDDEQIHCSC KEFEHSGILC RHSLRVLVVK  600
NYFQLPEKYF LLRWRVESSL VSVDDQNAQI SSDDCAQAFH SLTASLLTES LISKDRFNYV  660
HNELTSLLEH VRNMPVIDEY AANAAANNIS ES*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G198400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007217000.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	M5WX17	0.0	M5WX17_PRUPE; Uncharacterized protein
STRING	EMJ18199	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Prupe.3G198400.2.p
Entrez Gene	18781616

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]