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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Prupe.3G194500.1.p |
Common Name | PRUPE_ppa006303mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
CO-like |
Protein Properties |
Length: 419aa MW: 45098.3 Da PI: 5.7041 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.3G194500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 18.2 | 5.2e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
+C+ +++++ +C+++ +lC +C + H+ H++
Prupe.3G194500.1.p 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
7*****************************65677777766 PP
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2 | zf-B_box | 24.2 | 6.8e-08 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
C++++++++ C++ ++ lC++C +H g H++++
Prupe.3G194500.1.p 46 LLCERCNSQPALVRCTEERVSLCQNCDWMGH-GtstsasaHKRQT 89
57*****************************.5578888888765 PP
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3 | CCT | 59.4 | 1.3e-20 | 359 | 402 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R +a++RYkeK+k RkF+K++rY+sRKa+A+ R+RvKGrF k+
Prupe.3G194500.1.p 359 RSNAVMRYKEKKKARKFDKRVRYASRKARADVRKRVKGRFIKAG 402
899*************************************9975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC 60 TEERVSLCQN CDWMGHGTST SASAHKRQTL NCYSGCPSAS ELSSIWSFVL DLPAAGESAC 120 EQEMGLMSIA ENSTGSAWSP PESNAKQNAS GTVEVNGVRS VDKSGVLVGS SSVPELNPAT 180 HVVGQQAGSE NATLPKLFCH GTKGPAIPED DDLYDDFDMD EMDLNLENYE ELFGVSLNHS 240 EELFKNGGID SLFGAKNMSR GNSNYQDVGA AEGSSVGLVN ALQPACSNAA SADSVMSTKT 300 DPIICFPAKQ AQSNLSFSGV TGESSAGDCQ DCGASSMLLM GEPPWCPPCP ESSMQSANRS 360 NAVMRYKEKK KARKFDKRVR YASRKARADV RKRVKGRFIK AGEAYDYDPL NQARTRSY*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF189171 | 5e-98 | KF189171.1 Frangula alnus subsp. alnus clone Contig18771 polymorphic genomic sequence. |