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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G186200.1.p | ||||||||
Common Name | PRUPE_ppa001344mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 864aa MW: 99076.5 Da PI: 6.8768 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.9 | 1.3e-26 | 104 | 206 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +r+ ++t+Cka+++vk++ dgkw+++ Prupe.3G186200.1.p 104 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSynrprarqnkqdPENATGRRSCSKTDCKASMHVKRRPDGKWVIH 194 5******************************************99999999988776554555559999********************** PP FAR1 80 kleleHnHelap 91 ++++eHnHel p Prupe.3G186200.1.p 195 NFVKEHNHELLP 206 *********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-24 | 104 | 206 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-33 | 304 | 396 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.889 | 584 | 620 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-6 | 595 | 622 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 2.0E-4 | 596 | 618 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 864 aa Download sequence Send to blast |
MIFSDNNQLK LNNLTMDIDL RLPSGEHDKE DEEPHGIDNM LDHEEKLQNG DIENGNIVDV 60 RDEVHAEDGG DLNSPTADMV VFKEDTNLEP LFGMEFASHG EAYSFYQEYA RSMGFNTAIQ 120 NSRRSKTSRE FIDAKFACSR YGTKREYDKS YNRPRARQNK QDPENATGRR SCSKTDCKAS 180 MHVKRRPDGK WVIHNFVKEH NHELLPAQAV SEQTRKMYAA MARQFAEYKN VVGLKNDPKN 240 PFDKGRNLAL EAGDLKILLD FFTQMQNMNS NFFYAIDLGD DQRLKSLFWV DAKSRHDYIN 300 FSDVVSFDTT YIRNKYKMPL VLFVGVNQHY QFVLLGCALV SDESTTTFSW LMQTWLKAMG 360 GQAPKVIITD HDKSIKSVIS EVFPNAYHCF CLWHILGKVS ENLGHVIKRH ENFMAKFEKC 420 IHRSSTNEEF EKRWWKILEK FELKDDEWTQ SLYEDRKQWV PTYMRDVCLA GMSAVQRSES 480 VNSFFDKYVH KKTTVQEFLK QYEAILQDRY EEEAKADSDT WNKQPTLRSP SPLEKSVSGV 540 YTHAVFKKFQ VEVLGAVACH PKRERQDETT ITFRVQDFEK NQDFIVTWNE MKTEVSCLCC 600 LFEYKGYLCR HALIVLQICG LSAIPAQYIL KRWTKDVKSR HLVGEESDHG LSRVQKFNDL 660 YQRAMKVIEE GSLSQESYSV ACRALEEAFG NCVSVNNSSK SLIEAGTSSV THGLLCIEDD 720 SQNRSMGKTN KKKNPTKKRK VNSEPDVMTV GAQDSLQQMD KLNPRAVTLD GYYGAQQSVQ 780 GMVQLNLMAP TRDNYYGNQQ TIQGLGQLNS IAPSHDGYYS AQQSMHGLGQ MDFFRTAGGF 840 TYGMRDDPNV RTAPLHDDAS RHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G186200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007214930.2 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_020415030.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A251Q297 | 0.0 | A0A251Q297_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229656.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G186200.1.p |
Entrez Gene | 18783794 |