PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 840aa MW: 97141.4 Da PI: 7.0204

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G186100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.4	1e-27	76	163	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel p Prupe.3G186100.2.p 76 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSG---TSRRPTVKKTDCKASMHVKRRADGKWIIHEFIKEHNHELLP 163 5**************************************999888...7788889*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-25	76	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-24	283	376	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.274	563	599	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.0E-6	573	596	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-7	574	601	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence Send to blast
MDRNQNLGET VVDGPENMNG GRVSENMNMV AVVEEVQNRG GVVISSPKRD IQVFEGDTDF 60 EPCNGIEFES HEAAYSFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD 120 SGTSRRPTVK KTDCKASMHV KRRADGKWII HEFIKEHNHE LLPALAYHFR IHRNVKLAEK 180 NNIDILHAVS ERTRKMYVEM SRQSGGYQNT GFTTTDSNYQ FDKCRDLGLD EGDAQVMLEY 240 FKRIRKENPN FFYAIDLNEE QRVRNLFWVD AKSRSDYRSF NDVVSFDTSY IKTNDKLPFA 300 PFVGVNHHFQ SMLLGCALVA DDTKSTFVWL LKTWLRAMGG QCPKLVITDQ DQTLKAAIDE 360 VFPHARHCFT LWNILEKIPE TLAHVIKRHE NFLPKFNKCI FNSWTDEQFD LRWWKMVTRF 420 ELQDDEWIRL LYEDRKRWVP TYMGDTFFAG MCTTQRSESM NSFFDKYIHK KITLREFVKQ 480 YGTILQNRYE EEAIADFDTW HKQPALKSPS PWEKQMSTVY THAVFKKFQV EVLGVVGCQP 540 KKEHEDGPTT TFRVQDCEKD EYFMVTWNET KSEVSCSCRL FEYKGFLCRH SLIVLQICGL 600 SSIPFHYILK RWTKDAKSRQ SMVEETERVQ TRVQRYNDLC KRAIELSEEG SISEETYNIA 660 FRTLVEALKN CVNVNNSNNT VVDFSGTVHS IREAEEENQG SLASKTSRKK ITNRKRKVQA 720 EQDVILVEAQ DSLQQMDNLS SDGIPLPGYY GAQQNVHGLV QLNLMEPPHD SYYVNQQSMQ 780 GLGQLNSIAP NHDGFFGTQQ SIHGLGQLDF RPSTSFSYSL QDDPHLRSSQ LHGDASRHS*

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence Send to blast

MDRNQNLGET VVDGPENMNG GRVSENMNMV AVVEEVQNRG GVVISSPKRD IQVFEGDTDF  60
EPCNGIEFES HEAAYSFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD  120
SGTSRRPTVK KTDCKASMHV KRRADGKWII HEFIKEHNHE LLPALAYHFR IHRNVKLAEK  180
NNIDILHAVS ERTRKMYVEM SRQSGGYQNT GFTTTDSNYQ FDKCRDLGLD EGDAQVMLEY  240
FKRIRKENPN FFYAIDLNEE QRVRNLFWVD AKSRSDYRSF NDVVSFDTSY IKTNDKLPFA  300
PFVGVNHHFQ SMLLGCALVA DDTKSTFVWL LKTWLRAMGG QCPKLVITDQ DQTLKAAIDE  360
VFPHARHCFT LWNILEKIPE TLAHVIKRHE NFLPKFNKCI FNSWTDEQFD LRWWKMVTRF  420
ELQDDEWIRL LYEDRKRWVP TYMGDTFFAG MCTTQRSESM NSFFDKYIHK KITLREFVKQ  480
YGTILQNRYE EEAIADFDTW HKQPALKSPS PWEKQMSTVY THAVFKKFQV EVLGVVGCQP  540
KKEHEDGPTT TFRVQDCEKD EYFMVTWNET KSEVSCSCRL FEYKGFLCRH SLIVLQICGL  600
SSIPFHYILK RWTKDAKSRQ SMVEETERVQ TRVQRYNDLC KRAIELSEEG SISEETYNIA  660
FRTLVEALKN CVNVNNSNNT VVDFSGTVHS IREAEEENQG SLASKTSRKK ITNRKRKVQA  720
EQDVILVEAQ DSLQQMDNLS SDGIPLPGYY GAQQNVHGLV QLNLMEPPHD SYYVNQQSMQ  780
GLGQLNSIAP NHDGFFGTQQ SIHGLGQLDF RPSTSFSYSL QDDPHLRSSQ LHGDASRHS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G186100.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007217154.2	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_020415766.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A251Q247	0.0	A0A251Q247_PRUPE; Uncharacterized protein
STRING	XP_008229655.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.3G186100.2.p
Entrez Gene	18784429

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]