PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 856aa MW: 97812.4 Da PI: 7.0728

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G186000.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	101	187	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e+ ++ + + t+t+Cka+l++k+++dgkw+v+++ +eHnHe++p Prupe.3G186000.4.p 101 YYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESGTT---VNPRLCITKTDCKASLHIKRKDDGKWVVHSFIKEHNHEMCP 187 9***************************************9888...5666789******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-21	101	187	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-25	270	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.138	549	585	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-7	549	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-7	560	587	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MEIDLELPSC ERDKLVTGSD KDVNVVDVTD EKNVEEHVNS PTTSEHVKEA DGLDANQSAC 60 SLQAQDDAKN MGLNAVDEGK RVIQEPQNGL EFESKEEAYS YYREYARSVG FGITIKASRR 120 SKKSGKFIDI KIACSRFGSK RESGTTVNPR LCITKTDCKA SLHIKRKDDG KWVVHSFIKE 180 HNHEMCPDDF IYAISGRNKK PATVVCQKKG LQSALGQEDV RVMFEHFMCM QDEDPNFFYA 240 VDFDHEKRLR SVFWIDAKCR HDYSSFCDAV FFDTYYVRNN YRIPFVPIVG VNHHFQYILL 300 GCALMGEETI PAFVWLMQTW LKVVGGQAPR LIITDQDKYL KEAVADVFTD AYHCFCLWHV 360 LTRIPENVGF FIKENEIFME KFNKCIYRSW TVEQFEKKWW KLVDRFELRE NAWVHSLFED 420 RKKWVPTYMQ DSFMAGMSTK ERSGSITSFF DRYISQEATV NDFIEQYKGF QKDMYDMEVN 480 AVLETQDKQP GLRSLSPFEK QMATIYTGSV FKKFKVEVLG LASCQLQKDG ENEATAIFQV 540 DDLEERQNFT VSWNEAELKV CCSCHSFEYN GFLCRHAILV LQVSGVSGIP SHYILKRWTK 600 DAKVRCTVSD GPKRLNYRVQ RFNDLCKLAV KLGEEGSLSP EAYHIAFQAL EAALKHCVDA 660 NNSVRTVSEA NMSANHGFND VEEVNPSSNM AKSSKKKKTY KKRKAQTEQD SGTIRLQDSC 720 QQMEQMKSRA HNRDNCYVPQ QELEGEHGSR SRGLDSYYGA QQSMQGMGQL NSIAPISDGY 780 YCNQQATQGQ LHSLPTRVGH YGTQQSMRGM GQLSFRSPTV QSCFDIQGNL QDMSAGSSHF 840 HGNASKRLHG KHQTQ*

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MEIDLELPSC ERDKLVTGSD KDVNVVDVTD EKNVEEHVNS PTTSEHVKEA DGLDANQSAC  60
SLQAQDDAKN MGLNAVDEGK RVIQEPQNGL EFESKEEAYS YYREYARSVG FGITIKASRR  120
SKKSGKFIDI KIACSRFGSK RESGTTVNPR LCITKTDCKA SLHIKRKDDG KWVVHSFIKE  180
HNHEMCPDDF IYAISGRNKK PATVVCQKKG LQSALGQEDV RVMFEHFMCM QDEDPNFFYA  240
VDFDHEKRLR SVFWIDAKCR HDYSSFCDAV FFDTYYVRNN YRIPFVPIVG VNHHFQYILL  300
GCALMGEETI PAFVWLMQTW LKVVGGQAPR LIITDQDKYL KEAVADVFTD AYHCFCLWHV  360
LTRIPENVGF FIKENEIFME KFNKCIYRSW TVEQFEKKWW KLVDRFELRE NAWVHSLFED  420
RKKWVPTYMQ DSFMAGMSTK ERSGSITSFF DRYISQEATV NDFIEQYKGF QKDMYDMEVN  480
AVLETQDKQP GLRSLSPFEK QMATIYTGSV FKKFKVEVLG LASCQLQKDG ENEATAIFQV  540
DDLEERQNFT VSWNEAELKV CCSCHSFEYN GFLCRHAILV LQVSGVSGIP SHYILKRWTK  600
DAKVRCTVSD GPKRLNYRVQ RFNDLCKLAV KLGEEGSLSP EAYHIAFQAL EAALKHCVDA  660
NNSVRTVSEA NMSANHGFND VEEVNPSSNM AKSSKKKKTY KKRKAQTEQD SGTIRLQDSC  720
QQMEQMKSRA HNRDNCYVPQ QELEGEHGSR SRGLDSYYGA QQSMQGMGQL NSIAPISDGY  780
YCNQQATQGQ LHSLPTRVGH YGTQQSMRGM GQLSFRSPTV QSCFDIQGNL QDMSAGSSHF  840
HGNASKRLHG KHQTQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G186000.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020415067.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X3
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A251Q5H3	0.0	A0A251Q5H3_PRUPE; Uncharacterized protein
STRING	XP_008229651.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Prupe.3G186000.4.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]