PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G182900.1.p
Common NamePRUPE_ppa001069mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 920aa    MW: 101273 Da    PI: 6.3826
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G182900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.5e-24132233199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Prupe.3G182900.1.p 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 219
                         99*****************************8544444..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Prupe.3G182900.1.p 220 -WNEKNQLLLGIRRA 233
                         .8899999****997 PP
2Auxin_resp116.91.8e-38258341183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv+ ++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  Prupe.3G182900.1.p 258 AAHAAATNSRFTIFYNPRASPSEFVITLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWTNSHWRSVK 341
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.11E-49117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-42123247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-21131232No hitNo description
PfamPF023625.4E-22132233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548132234IPR003340B3 DNA binding domain
SMARTSM010191.8E-24132234IPR003340B3 DNA binding domain
PfamPF065071.5E-33258341IPR010525Auxin response factor
SuperFamilySSF542777.85E-7777857No hitNo description
PfamPF023097.8E-7780865IPR033389AUX/IAA domain
PROSITE profilePS5174524.373783867IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MRLSSSSSAS GFNHQPQEGE KKCLNSELWH ACAGPLVSLP LLGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVITLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDSV RWTNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPSGIPSFH GLKDGDMGIN APLMWLQGGV GDQGIQSLNF  420
QGFGVTPWMQ PRLDASMAGL QPEVYQAMAA AALQEMRTVD SSKCASQSLL PFQQSSNVSN  480
GPAAVLQRQV LPQSQSQNTY LQSFQENQAP AQTQVLQQQL QRYHPYSDQR QQQQLQQHQQ  540
QQQLHQQHQQ QLQQSHHLHQ LSVQQQIPNV MSALSNFASA TQSQSASLQA IPSQSQQQSF  600
PDPVGNPISS SDVPPIHSIL GSLSQDGASH LLDLSGSNSV ISSSLLPKQI AGEQQLSSGA  660
AQCVLPQVEQ LGTPQSNISE LTALPPFPGR EYSAFQGGTD PQSNLLFGVN IDSSSLMLHN  720
GIPTLRNIGN GNDSLSMPFG ASSYTSATGN DFPLNSDMTT SSCVDESGFL QSSENVDQVN  780
PTRNFVKVHK SGSFGRSLDI SKFSSYDELR SELARMFGLE GQLEDPQRSG WQLVFGDREN  840
DVLLLGDDPW QEFVNNVWYI KILSPLEVQQ MGKEGLNCAA SVPSNKLSNG GNTTCDDYVS  900
RQDVRNSTNG IASLGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621736243388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.36220.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G182900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217690.10.0auxin response factor 6
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM5WYY70.0M5WYY7_PRUPE; Auxin response factor
STRINGEMJ188890.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]