PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G179800.2.p | ||||||||
Common Name | PRUPE_ppa017228mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 551aa MW: 60222.7 Da PI: 7.1705 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.5 | 1.8e-16 | 351 | 397 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Prupe.3G179800.2.p 351 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 397 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-20 | 344 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.152 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.64E-18 | 350 | 401 | No hit | No description |
Pfam | PF00010 | 9.0E-14 | 351 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-20 | 351 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-16 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MNSCIPDWNF EADLPLTNQK KPMGPDHELV ELLWRNGQVV LHSQTHRKPC PNPPNEARQV 60 QKQDPQTIRV GGLYGNSSNL TQDEDTGSLI HYPLEDSFDK EFCSHFFSEL PSCDPIEIDK 120 PTKQFEEEKF AKFGASDTPH LVSTAPQPNV KSPAGMGYPA NPMPPPRYQY NNSTEQNQNL 180 VGLGKVVNFS TFATPGKGDR GSSRGKIGGK ESGNLTQAEV KECSVMTVGS SYVGSNQVLN 240 DFDVSRASSN CDGTTGLSVG PFYDNVQKMM PQNERGKTDT LDPTLTSSSG GSGSSFGRGG 300 KRSNVVNSNK RKGRDAEESE CQSEAAELES AAGNKSAQRS GSSRRSRAAE VHNLSERRRR 360 DRINEKMRAL QELIPHSNKT DKASMLDEAI EYLKSLQMQL QVMWMGSGMA PMMFPGMQHY 420 MSRMGMGMGM GVGMGPPALP SMHNPMHLPR VPLVDQCINV APATNQAVMC QAPVLNPVDY 480 HNQMQNPAFQ EQYARLMGFH HMQTMSQPMN MFRFGSQPMQ QNQMTAPTGI NSGPLGGGGT 540 ANDTLSGKMC * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 355 | 360 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00606 | ChIP-seq | Transfer from AT2G43010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G179800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689415 | 0.0 | KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020416276.1 | 0.0 | transcription factor PIF4 isoform X2 | ||||
TrEMBL | A0A251Q583 | 0.0 | A0A251Q583_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17455 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 3e-54 | phytochrome interacting factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G179800.2.p |
Entrez Gene | 18782264 |