PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G170600.1.p
Common NameMADS8, PRUPE_ppa010578mg, SHP
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28313.8 Da    PI: 9.9887
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G170600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.6e-312473150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Prupe.3G170600.1.p 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73
                        79***********************************************8 PP
2K-box112.83.4e-37921884100
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         ++g s++ea+++ +qqe++kL+++i+++q+++Rh+lGe L++L++keL++Le +Lek++++iRskKne+l+++ie +qk+e elq++n++L
  Prupe.3G170600.1.p  92 TNGGSVSEANTQFYQQESSKLRRQIREIQNSNRHILGEALSTLNIKELKNLEGRLEKGISRIRSKKNEMLFAEIEFMQKREMELQNHNNYL 182
                         556669************************************************************************************* PP

               K-box  95 rkklee 100
                         r+k++e
  Prupe.3G170600.1.p 183 RAKIAE 188
                         ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.5151676IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-331789IPR002100Transcription factor, MADS-box
CDDcd002655.64E-431791No hitNo description
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-331838IPR002100Transcription factor, MADS-box
PfamPF003192.0E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-335374IPR002100Transcription factor, MADS-box
PfamPF014862.0E-26100186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.203102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEFPNQAPES SSQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSTRGRLY EYANNSVRAT IDRYKKACTD STNGGSVSEA NTQFYQQESS KLRRQIREIQ  120
NSNRHILGEA LSTLNIKELK NLEGRLEKGI SRIRSKKNEM LFAEIEFMQK REMELQNHNN  180
YLRAKIAENE RAQQQQTNMI QGTSYDQSMP SQSYDRNFLP VILEANNNNN NHYSRHDQTA  240
LQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A8e-201784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B8e-201784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C8e-201784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D8e-201784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P9e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q9e-201684169Myocyte-specific enhancer factor 2B
1tqe_R9e-201684169Myocyte-specific enhancer factor 2B
1tqe_S9e-201684169Myocyte-specific enhancer factor 2B
5f28_A8e-201684169MEF2C
5f28_B8e-201684169MEF2C
5f28_C8e-201684169MEF2C
5f28_D8e-201684169MEF2C
6byy_C9e-201684169MEF2 CHIMERA
6byy_D9e-201684169MEF2 CHIMERA
6c9l_A9e-201684169Myocyte-specific enhancer factor 2B
6c9l_B9e-201684169Myocyte-specific enhancer factor 2B
6c9l_C9e-201684169Myocyte-specific enhancer factor 2B
6c9l_D9e-201684169Myocyte-specific enhancer factor 2B
6c9l_E9e-201684169Myocyte-specific enhancer factor 2B
6c9l_F9e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.26890.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|PubMed:11414613}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G170600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7776350.0DQ777635.1 Prunus persica SHATTERPROOF-like (SHP) mRNA, complete cds.
GenBankEU0721190.0EU072119.1 Prunus persica SHATTERPROOF-like protein (MADS8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217264.10.0agamous-like MADS-box protein AGL1
RefseqXP_020414870.10.0agamous-like MADS-box protein AGL1
SwissprotQ93XH41e-128MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLQ0GPY81e-179Q0GPY8_PRUPE; PLENA-like MADS-box protein
STRINGEMJ184631e-180(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-111MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Tani E,Polidoros AN,Tsaftaris AS
    Characterization and expression analysis of FRUITFULL- and SHATTERPROOF-like genes from peach (Prunus persica) and their role in split-pit formation.
    Tree Physiol., 2007. 27(5): p. 649-59
    [PMID:17267356]
  3. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  4. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  5. Tadiello A, et al.
    A PLENA-like gene of peach is involved in carpel formation and subsequent transformation into a fleshy fruit.
    J. Exp. Bot., 2009. 60(2): p. 651-61
    [PMID:19264761]
  6. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]