PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G148900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 390aa MW: 45009.2 Da PI: 8.813 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.9 | 3.5e-20 | 11 | 63 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.....klyeys 50 i n++ r++tf kRr+g++KKA+E S+LC+ +v++ii+++++ +l++++ Prupe.3G148900.1.p 11 IANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQtdrppELHTWP 63 89**************************************9844444477776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.497 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-20 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-21 | 2 | 98 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.17E-23 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 2.2E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-18 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MGRGRLKMEL IANERARKTT FQKRRKGMMK KAYEFSTLCE LDVCMIIYGP KQTDRPPELH 60 TWPENRDEVD RIINKYKASI MRKPAKKTFD LSDLLRDRKT KVHVDIYRAR KEMYEAKYPT 120 WDERIESFSE NQLEALLNTL DTKLESGKRT LLNKRKQSAE CHQHQIHCMG KAAPNKIMLM 180 GGNPNNNIIG ESPSQKQPCN YFMQGHVREE DQKPMRSLSN NMVDMHPVSS FDHHHHQSSD 240 QMLQLDNSNE YLNSLVAHNP SPMAMWMLME SNYNYSTLQF SSGASSSAHS QSPLEGYQSN 300 FNDPMMQSTV DNMNMNMMML NGNINPPSSS SMSQYYARLM HPTVPYMQQY PMMPAAGVSS 360 HQVQVHASQG KDEPYENINQ YVVMNNRMV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G148900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020415605.1 | 0.0 | MADS-box transcription factor 50 | ||||
TrEMBL | A0A251Q0K4 | 0.0 | A0A251Q0K4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229316.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 3e-25 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G148900.1.p |