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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Prupe.3G126300.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
LBD |
Protein Properties |
Length: 231aa MW: 25907.4 Da PI: 8.5553 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.3G126300.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 110.4 | 1.3e-34 | 14 | 105 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
aCaaCk++r+kC ++Cvlapyfpa+++++f +vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv G +g ++ + +l++ k
Prupe.3G126300.2.p 14 ACAACKHQRKKCHDGCVLAPYFPADRTREFLAVHKVFGVSNVTKMVKNANEANRRKVVDSLVWEALCRQKDPVLGPYGEYRMVFDELKRYK 104
7******************************************************************************999999999887 PP
DUF260 92 a 92
+
Prupe.3G126300.2.p 105 N 105
5 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MQRKNNGTPG TQPACAACKH QRKKCHDGCV LAPYFPADRT REFLAVHKVF GVSNVTKMVK 60 NANEANRRKV VDSLVWEALC RQKDPVLGPY GEYRMVFDEL KRYKNHEIQM VHPSQVQKGM 120 CFSKSLSDFV GWNCGGANGI SNHNINLGGY LHENENVIID SASYGYPSNC ELQSPENIIK 180 QAKLVDSVVL PLNQHQQRSI NNINQQYYLS GQLNQIISKP IEDTIWEGGT *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5ly0_A | 4e-23 | 8 | 142 | 5 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-23 | 8 | 142 | 5 | 124 | LOB family transfactor Ramosa2.1 |