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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G111300.1.p | ||||||||
Common Name | PRUPE_ppb021823mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 67aa MW: 7496.76 Da PI: 9.2734 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69 | 4.4e-22 | 25 | 66 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+ien++nrqv f+k rng+lK A+ELS LCdaeva+i+fss Prupe.3G111300.1.p 25 KQIENTTNRQVAFCKKRNGLLKMAYELSLLCDAEVALIVFSS 66 78**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-16 | 17 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.315 | 17 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-23 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-21 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-20 | 27 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-23 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-23 | 54 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MAYENKSMSL DSPQRKLGWG KIEVKQIENT TNRQVAFCKK RNGLLKMAYE LSLLCDAEVA 60 LIVFSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.1710 | 4e-89 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G111300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY705972 | 9e-86 | AY705972.1 Prunus persica MADS4 mRNA, complete cds. | |||
GenBank | EU072354 | 9e-86 | EU072354.1 Prunus persica AGAMOUS-like protein (AG) gene, complete cds. | |||
GenBank | FJ184275 | 9e-86 | FJ184275.1 Prunus persica MADS-box transcription factor (FAR) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211925.1 | 7e-36 | floral homeotic protein AGAMOUS isoform X2 | ||||
Refseq | XP_008225406.1 | 3e-35 | PREDICTED: floral homeotic protein AGAMOUS isoform X3 | ||||
Refseq | XP_008225407.1 | 8e-36 | PREDICTED: floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_008225408.1 | 7e-36 | PREDICTED: floral homeotic protein AGAMOUS isoform X2 | ||||
Refseq | XP_008225409.1 | 7e-36 | PREDICTED: floral homeotic protein AGAMOUS isoform X4 | ||||
Refseq | XP_016648725.1 | 8e-36 | PREDICTED: floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_020417370.1 | 8e-36 | floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_020417372.1 | 7e-36 | floral homeotic protein AGAMOUS isoform X3 | ||||
Refseq | XP_021825648.1 | 8e-36 | floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_021825649.1 | 7e-36 | floral homeotic protein AGAMOUS isoform X2 | ||||
Refseq | XP_021825651.1 | 7e-36 | floral homeotic protein AGAMOUS isoform X2 | ||||
Refseq | XP_021825652.1 | 7e-36 | floral homeotic protein AGAMOUS isoform X3 | ||||
Refseq | XP_021825653.1 | 8e-36 | floral homeotic protein AGAMOUS isoform X4 | ||||
Swissprot | Q40872 | 4e-29 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | M5WVL1 | 2e-41 | M5WVL1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17842 | 3e-42 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-29 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G111300.1.p |
Entrez Gene | 18782922 |