PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 619aa MW: 72216.7 Da PI: 8.7668

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G090400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.8	6.7e-22	11	94	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l++++ ++++w+v ++ leHnH l Prupe.3G090400.2.p 11 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRVLEVTLEHNHLL 94 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-19	11	94	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-33	213	306	IPR018289	MULE transposase domain
Pfam	PF04434	1.5E-4	494	532	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.891	500	536	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	511	538	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MEFESYDDAY NYYNCYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNRLR 60 KETRTGCPAM LRMRLVDSKR WRVLEVTLEH NHLLGAKIYK SIKKVGSGMK RKSQSSSDAE 120 KRTIKLYRAL VIDSGVDGTS NLNPTDIRNF PDHPNQLNLK KGDTQAIYNY LCRMQLTNPN 180 FFYLMDLNDD GRLRNVFWMD ARCRAACGYF ADVIYFDNTY LSNKYEIPLV AFVGINHHGQ 240 TVLLGCALLA GETTESYTWL FRAWLTCVSG QFPQTIITDR CKALQSAIAE VFPRCHHRFG 300 LSHIIKKVPE KLGGLRNYDA IRKALIKAVY ETLKVIEFEA AWGFMIQRFG VGDHEWLHSL 360 YEDRFRWAPV YLKETFFAGM SAARPGETLS PFFDRYVHKQ TPLKEFLDKY ELALQKKHKE 420 EALADIESRS SSPTLKTRCS FEFQLSKVYT REIFKNFQFE VEEMYSCFST TQLHVDGPII 480 IFLVKERVVV EGNRREIRDY EVLYNRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI 540 PSKYILSRWK KDFKRIYIPD HGSSNADDTD RMQWFNQLYR SALQIVEEGV ISLDHYKVAL 600 QAFEESLNRV HDVEDKHE*

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MEFESYDDAY NYYNCYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNRLR  60
KETRTGCPAM LRMRLVDSKR WRVLEVTLEH NHLLGAKIYK SIKKVGSGMK RKSQSSSDAE  120
KRTIKLYRAL VIDSGVDGTS NLNPTDIRNF PDHPNQLNLK KGDTQAIYNY LCRMQLTNPN  180
FFYLMDLNDD GRLRNVFWMD ARCRAACGYF ADVIYFDNTY LSNKYEIPLV AFVGINHHGQ  240
TVLLGCALLA GETTESYTWL FRAWLTCVSG QFPQTIITDR CKALQSAIAE VFPRCHHRFG  300
LSHIIKKVPE KLGGLRNYDA IRKALIKAVY ETLKVIEFEA AWGFMIQRFG VGDHEWLHSL  360
YEDRFRWAPV YLKETFFAGM SAARPGETLS PFFDRYVHKQ TPLKEFLDKY ELALQKKHKE  420
EALADIESRS SSPTLKTRCS FEFQLSKVYT REIFKNFQFE VEEMYSCFST TQLHVDGPII  480
IFLVKERVVV EGNRREIRDY EVLYNRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI  540
PSKYILSRWK KDFKRIYIPD HGSSNADDTD RMQWFNQLYR SALQIVEEGV ISLDHYKVAL  600
QAFEESLNRV HDVEDKHE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G090400.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007216973.2	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_020416629.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A251PXJ9	0.0	A0A251PXJ9_PRUPE; Uncharacterized protein
STRING	EMJ18172	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Prupe.3G090400.2.p
Entrez Gene	18781732

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]