PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 668aa MW: 77399.4 Da PI: 8.1343

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G090400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.5e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l++++ ++++w+v ++ leHnH l Prupe.3G090400.1.p 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRVLEVTLEHNHLL 143 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-19	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.6E-33	262	355	IPR018289	MULE transposase domain
Pfam	PF04434	1.6E-4	543	581	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.891	549	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	560	587	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MEVASANIEQ VPDGECNDIV TDRDGVLTEL DVQNGVLEGR KEFVAPAVGM EFESYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML 120 RMRLVDSKRW RVLEVTLEHN HLLGAKIYKS IKKVGSGMKR KSQSSSDAEK RTIKLYRALV 180 IDSGVDGTSN LNPTDIRNFP DHPNQLNLKK GDTQAIYNYL CRMQLTNPNF FYLMDLNDDG 240 RLRNVFWMDA RCRAACGYFA DVIYFDNTYL SNKYEIPLVA FVGINHHGQT VLLGCALLAG 300 ETTESYTWLF RAWLTCVSGQ FPQTIITDRC KALQSAIAEV FPRCHHRFGL SHIIKKVPEK 360 LGGLRNYDAI RKALIKAVYE TLKVIEFEAA WGFMIQRFGV GDHEWLHSLY EDRFRWAPVY 420 LKETFFAGMS AARPGETLSP FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRSS 480 SPTLKTRCSF EFQLSKVYTR EIFKNFQFEV EEMYSCFSTT QLHVDGPIII FLVKERVVVE 540 GNRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK 600 DFKRIYIPDH GSSNADDTDR MQWFNQLYRS ALQIVEEGVI SLDHYKVALQ AFEESLNRVH 660 DVEDKHE*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MEVASANIEQ VPDGECNDIV TDRDGVLTEL DVQNGVLEGR KEFVAPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML  120
RMRLVDSKRW RVLEVTLEHN HLLGAKIYKS IKKVGSGMKR KSQSSSDAEK RTIKLYRALV  180
IDSGVDGTSN LNPTDIRNFP DHPNQLNLKK GDTQAIYNYL CRMQLTNPNF FYLMDLNDDG  240
RLRNVFWMDA RCRAACGYFA DVIYFDNTYL SNKYEIPLVA FVGINHHGQT VLLGCALLAG  300
ETTESYTWLF RAWLTCVSGQ FPQTIITDRC KALQSAIAEV FPRCHHRFGL SHIIKKVPEK  360
LGGLRNYDAI RKALIKAVYE TLKVIEFEAA WGFMIQRFGV GDHEWLHSLY EDRFRWAPVY  420
LKETFFAGMS AARPGETLSP FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRSS  480
SPTLKTRCSF EFQLSKVYTR EIFKNFQFEV EEMYSCFSTT QLHVDGPIII FLVKERVVVE  540
GNRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK  600
DFKRIYIPDH GSSNADDTDR MQWFNQLYRS ALQIVEEGVI SLDHYKVALQ AFEESLNRVH  660
DVEDKHE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G090400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007216973.2	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_020416629.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A251PXJ9	0.0	A0A251PXJ9_PRUPE; Uncharacterized protein
STRING	XP_008228719.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Prupe.3G090400.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]