PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 669aa MW: 76827 Da PI: 5.369

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G090300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.3e-22	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+v+++eleHnH ++ Prupe.3G090300.1.p 60 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSNRWRVIEVELEHNHLIS 142 9*************99997.66779**********99888.....*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-19	60	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-28	263	357	IPR018289	MULE transposase domain
Pfam	PF04434	1.4E-4	550	583	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.26	550	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.7E-6	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MDEVSLNTEP AGDDDADEFE IEGDCAMTDF ISQTGIIQGE NPLPPVVGME FDSYEDVYYF 60 YNCYAKQQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMDSNRWRV IEVELEHNHL ISPASGKFYK SHKSVGVGTK RALQLDTAEE VQKIRLFRTV 180 IIDSEGNGSI DVDEGESGNR VDYSNQLKLK EGDAQAVQNY FSRLQLMDPN FFYVVDLNEK 240 GCLRNLFWAD ARTRVAYSYF CDIVAIDATC LENKFEVPLV SFIGVNHHGQ SVLLGCGLLA 300 SETVESYTWL FRAWLTCILG RPPQAIITSQ CRTLQTAISD VFPRASHCLC LSHIMQKFPE 360 NLGGLFEYEA IKESFSRAVY YSLRVEEFEA AWEDMVQRHG IRDHKWLQAL FDDRKRWVPV 420 YLKDIFLAGM SPVQPSEVVS SYFKEFLHKD TPLKEFLDKY DQALQTHHRL EALADLDSRN 480 SSYMLKSGCY FELQLSKVYT NDILRKFESE VEGMYSCFST SQLNPDGPVI THIVKEQTEV 540 DGNRREVRDY EVLYNPSEME VLCICGMFNL RGYLCRHALS VLNQNGVEEI PAQYVLSRWR 600 KDIERNYIFD HSCSGIDINN PVHRYDHLYK CIVQVVEEGR KSQDRYKVAF GALDEILNKL 660 CLTEDPAL*

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MDEVSLNTEP AGDDDADEFE IEGDCAMTDF ISQTGIIQGE NPLPPVVGME FDSYEDVYYF  60
YNCYAKQQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMDSNRWRV IEVELEHNHL ISPASGKFYK SHKSVGVGTK RALQLDTAEE VQKIRLFRTV  180
IIDSEGNGSI DVDEGESGNR VDYSNQLKLK EGDAQAVQNY FSRLQLMDPN FFYVVDLNEK  240
GCLRNLFWAD ARTRVAYSYF CDIVAIDATC LENKFEVPLV SFIGVNHHGQ SVLLGCGLLA  300
SETVESYTWL FRAWLTCILG RPPQAIITSQ CRTLQTAISD VFPRASHCLC LSHIMQKFPE  360
NLGGLFEYEA IKESFSRAVY YSLRVEEFEA AWEDMVQRHG IRDHKWLQAL FDDRKRWVPV  420
YLKDIFLAGM SPVQPSEVVS SYFKEFLHKD TPLKEFLDKY DQALQTHHRL EALADLDSRN  480
SSYMLKSGCY FELQLSKVYT NDILRKFESE VEGMYSCFST SQLNPDGPVI THIVKEQTEV  540
DGNRREVRDY EVLYNPSEME VLCICGMFNL RGYLCRHALS VLNQNGVEEI PAQYVLSRWR  600
KDIERNYIFD HSCSGIDINN PVHRYDHLYK CIVQVVEEGR KSQDRYKVAF GALDEILNKL  660
CLTEDPAL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G090300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007215010.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	M5WRA1	0.0	M5WRA1_PRUPE; Uncharacterized protein
STRING	EMJ16209	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Prupe.3G090300.1.p
Entrez Gene	18782368

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]