PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G060700.1.p
Common NamePRUPE_ppa001405mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91800.5 Da    PI: 6.4672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G060700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Prupe.3G060700.1.p 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                        5679*****************************************************97 PP
2START168.44.9e-531603682205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g+
  Prupe.3G060700.1.p 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDLPSWLRDCRAVDVLNVLPTAngGT 249
                         7899******************************************************.**************************9999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p  df+ +Ry+  l++g++vi+ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+  ++
  Prupe.3G060700.1.p 250 IELLYMQLYAPTTLAPaCDFWLLRYTSVLEDGSLVICVRSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPCSV 340
                         ***********************************************9998899************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s+++ ++k+++a+l+++++
  Prupe.3G060700.1.p 341 PEVLRPLYESSAVLAQKMTMAALRQLRQ 368
                         ************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5481175IPR001356Homeobox domain
SMARTSM003891.2E-151379IPR001356Homeobox domain
SuperFamilySSF466893.42E-171579IPR009057Homeodomain-like
CDDcd000869.29E-171676No hitNo description
PfamPF000462.9E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181874IPR009057Homeodomain-like
CDDcd146861.14E-668107No hitNo description
PROSITE profilePS5084822.594150378IPR002913START domain
CDDcd088751.48E-75154370No hitNo description
SuperFamilySSF559617.55E-35159370No hitNo description
SMARTSM002345.7E-40159369IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-19159365IPR023393START-like domain
PfamPF018521.7E-50160368IPR002913START domain
PfamPF086707.6E-52694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAMSCKDGKG GLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSHLV YENGYFRQHT  120
QGTTLATKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDLPSWL RDCRAVDVLN  240
VLPTANGGTI ELLYMQLYAP TTLAPACDFW LLRYTSVLED GSLVICVRSL KNTQNGPTMP  300
PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHMDLEPCSV PEVLRPLYES SAVLAQKMTM  360
AALRQLRQIA HEVSQSNVTG WGRRPAALRA LSQRLSRGFN EALNGFTDEG WSMMGNDGMD  420
DVTILINSSP DKLMGLNLSF ANGFPAVSNS VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNIDAYSAA AVKVGPCSLA GSRVGSFGGQ VILPLAHTIE HEEFLEVIKL EGVGHSPEDA  540
MMPREMFLLQ LCSGMDENAV GSCAELIFAP IDASFADDAP LLPSGFRIIP LDYGKEASSP  600
NRTLDLASAL EIGPTGNKAS SEFSANTGCV RSVMTIAFEF ACESHMQEHV ASMARQYVRS  660
IISSVQRVAL ALSPSHLSSH AGLRSPLGTP EAQTLARWIC NSYRCYLGVE LLKSSTEGGE  720
SILKSLWHHS DAIMCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDDHGRKTLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE RAVAWKVLNE EETAHCMCFL FVNWSFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G060700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0005530.0KJ000553.1 Prunus persica homeobox protein 15 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214960.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLM5WR530.0M5WR53_PRUPE; Homeobox protein 15
STRINGEMJ161590.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]