PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G032000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 332aa    MW: 37440.9 Da    PI: 7.6212
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G032000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.45.2e-20140188149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                         k++e+k +r+vtfskR+ g++ KA ELSvLC+ae a i++ss+gk++ +
  Prupe.3G032000.1.p 140 KKVEEKNKRHVTFSKRKRGLFNKAAELSVLCGAETAGIVVSSNGKVFCF 188
                         57899****************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-24132191IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.493132192IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-17134154IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-24135209IPR002100Transcription factor, MADS-box
PfamPF003192.8E-19141188IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-17154169IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-17169190IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAKRGADESE ITNDDNINGK RQRTDPTMVK MVAAESEITN DDNINGKRQI TDPTMAKMGA  60
AEIEITNDDN INGKRQITDP TMAKMGASES EITNDNNING KRPRTDPTMA KRGAAEIEIT  120
NDNNINGKRP SKRQRRVEIK KVEEKNKRHV TFSKRKRGLF NKAAELSVLC GAETAGIVVS  180
SNGKVFCFGS PSADTVIHRY LGHNASSLLH AGQPDIHHVN GEVRYCPYNI SSHVSIMRNG  240
NKQVEDYMEA RRHMEVEKIK RVKNNNTDNI DDIDNNIDGE RGGWCHWWWE KPIEMTTSLE  300
EFEEYMAALR QLKHNVEVRT NQMVINVGYN C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A9e-141262041288PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B9e-141262041288PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G032000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963356.13e-70agamous-like MADS-box protein AGL29
TrEMBLA0A251PUI40.0A0A251PUI4_PRUPE; Uncharacterized protein
STRINGXP_008228335.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1658149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-20AGAMOUS-like 62