PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G027400.4.p | ||||||||
Common Name | PRUPE_ppa005159mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 475aa MW: 51971.8 Da PI: 6.0045 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.1 | 4.1e-33 | 255 | 309 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerFveav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl Prupe.3G027400.4.p 255 RPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKVMNVEGLTIYHVKSHLQKYRL 309 59****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.432 | 251 | 312 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.85E-18 | 254 | 309 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-31 | 254 | 310 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-25 | 256 | 310 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-9 | 257 | 308 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.7E-23 | 345 | 392 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MKVGLPSTIM SRHDIISVPQ SETTKEVTQS YCTPKSQMHD FLGSKSEGRS LAASECSSAR 60 LSPFIRAESL GSPTNIRGSS VQHSQNTFSR SSVFCTSLYQ SSSSSSETSR QLGNLPFLPH 120 PPTYSQSISA VDSKSPFLLS DNMSNQYDDE QSEDLMKDFL NLHGDGSHGS FHGISCGSDT 180 LALTEQLELQ FLSDQLDMAI TDNGENPGLD EIYEIPQASP KPAIGLTYSK SCRLTTLPVD 240 ALSSHPSPGP SPAHRPRMRW TPELHERFVE AVNKLDGAEK ATPKGVLKVM NVEGLTIYHV 300 KSHLQKYRLA KYMPEKREDK AASSSEEKKA ASSSSESDGR RKGSIQITEA LRMQMEVQKQ 360 LHEQLEVQRA LQLRIEDHAK YLQKILEEQQ KAGSALLSPQ ALSSLTTNSI QEPEQQPSSS 420 AGVSPTQPAE SDSSSPQSLK HKATDSSESE PPACTKKQRL EEKPDEGVVE NPQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-26 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-26 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-26 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-26 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-26 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-26 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-26 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-26 | 255 | 312 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G027400.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215324.1 | 0.0 | myb family transcription factor PHL6 | ||||
Refseq | XP_020415890.1 | 0.0 | myb family transcription factor PHL6 | ||||
Refseq | XP_020415891.1 | 0.0 | myb family transcription factor PHL6 | ||||
Refseq | XP_020415892.1 | 0.0 | myb family transcription factor PHL6 | ||||
Refseq | XP_020415893.1 | 0.0 | myb family transcription factor PHL6 | ||||
Refseq | XP_020415894.1 | 0.0 | myb family transcription factor PHL6 | ||||
Swissprot | Q949U2 | 1e-140 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | M5X4S6 | 0.0 | M5X4S6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16523 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-114 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G027400.4.p |
Entrez Gene | 18781980 |
Publications ? help Back to Top | |||
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