PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 475aa MW: 51971.8 Da PI: 6.0045

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G027400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4.1e-33	255	309	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerFveav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl Prupe.3G027400.2.p 255 RPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKVMNVEGLTIYHVKSHLQKYRL 309 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.432	251	312	IPR017930	Myb domain
SuperFamily	SSF46689	9.85E-18	254	309	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-31	254	310	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-25	256	310	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-9	257	308	IPR001005	SANT/Myb domain
Pfam	PF14379	4.7E-23	345	392	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MKVGLPSTIM SRHDIISVPQ SETTKEVTQS YCTPKSQMHD FLGSKSEGRS LAASECSSAR 60 LSPFIRAESL GSPTNIRGSS VQHSQNTFSR SSVFCTSLYQ SSSSSSETSR QLGNLPFLPH 120 PPTYSQSISA VDSKSPFLLS DNMSNQYDDE QSEDLMKDFL NLHGDGSHGS FHGISCGSDT 180 LALTEQLELQ FLSDQLDMAI TDNGENPGLD EIYEIPQASP KPAIGLTYSK SCRLTTLPVD 240 ALSSHPSPGP SPAHRPRMRW TPELHERFVE AVNKLDGAEK ATPKGVLKVM NVEGLTIYHV 300 KSHLQKYRLA KYMPEKREDK AASSSEEKKA ASSSSESDGR RKGSIQITEA LRMQMEVQKQ 360 LHEQLEVQRA LQLRIEDHAK YLQKILEEQQ KAGSALLSPQ ALSSLTTNSI QEPEQQPSSS 420 AGVSPTQPAE SDSSSPQSLK HKATDSSESE PPACTKKQRL EEKPDEGVVE NPQQ*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MKVGLPSTIM SRHDIISVPQ SETTKEVTQS YCTPKSQMHD FLGSKSEGRS LAASECSSAR  60
LSPFIRAESL GSPTNIRGSS VQHSQNTFSR SSVFCTSLYQ SSSSSSETSR QLGNLPFLPH  120
PPTYSQSISA VDSKSPFLLS DNMSNQYDDE QSEDLMKDFL NLHGDGSHGS FHGISCGSDT  180
LALTEQLELQ FLSDQLDMAI TDNGENPGLD EIYEIPQASP KPAIGLTYSK SCRLTTLPVD  240
ALSSHPSPGP SPAHRPRMRW TPELHERFVE AVNKLDGAEK ATPKGVLKVM NVEGLTIYHV  300
KSHLQKYRLA KYMPEKREDK AASSSEEKKA ASSSSESDGR RKGSIQITEA LRMQMEVQKQ  360
LHEQLEVQRA LQLRIEDHAK YLQKILEEQQ KAGSALLSPQ ALSSLTTNSI QEPEQQPSSS  420
AGVSPTQPAE SDSSSPQSLK HKATDSSESE PPACTKKQRL EEKPDEGVVE NPQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G027400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007215324.1	0.0	myb family transcription factor PHL6
Refseq	XP_020415890.1	0.0	myb family transcription factor PHL6
Refseq	XP_020415891.1	0.0	myb family transcription factor PHL6
Refseq	XP_020415892.1	0.0	myb family transcription factor PHL6
Refseq	XP_020415893.1	0.0	myb family transcription factor PHL6
Refseq	XP_020415894.1	0.0	myb family transcription factor PHL6
Swissprot	Q949U2	1e-140	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	M5X4S6	0.0	M5X4S6_PRUPE; Uncharacterized protein
STRING	EMJ16523	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-114	G2-like family protein

Link Out ? help Back to Top
Phytozome	Prupe.3G027400.2.p
Entrez Gene	18781980

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]