PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 190aa MW: 20614.4 Da PI: 9.8184

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G019900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.7	8.2e-20	95	144	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr ++ +gr++AeIrdp++ rkr++lg+++taeeAa+ +++a++kl+g Prupe.3G019900.1.p 95 KFIGVRKRP-WGRYAAEIRDPTQ---RKRVWLGTYDTAEEAAAVYDRAALKLKG 144 789****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	1.7E-47	2	188	IPR017392	AP2/ERF transcription factor ERF/PTI6
CDD	cd00018	3.71E-30	95	151	No hit	No description
SMART	SM00380	5.8E-34	95	158	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-12	95	144	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.3E-28	95	152	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.865	95	152	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-21	95	153	IPR016177	DNA-binding domain
PRINTS	PR00367	2.3E-8	96	107	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-8	118	134	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MTTTTTILTK PKMIHQNQNL PPNPTRLPPK RLVRIILADA DATDSSSDED SVVPGVKRHV 60 RKISRELSSP SNCSCHSKLS KRRNQPEPDP TSREKFIGVR KRPWGRYAAE IRDPTQRKRV 120 WLGTYDTAEE AAAVYDRAAL KLKGPHAVTN FTIPVIAEET VADEVVPAVG SSHVSEVGGE 180 GGAAGCVSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-19	96	159	6	70	ATERF1
3gcc_A	3e-19	96	159	6	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G019900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020416096.1	1e-138	pathogenesis-related genes transcriptional activator PTI6-like
Swissprot	Q9SUE3	2e-34	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	A0A251PTU1	1e-136	A0A251PTU1_PRUPE; Uncharacterized protein
STRING	XP_008228057.1	1e-102	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5585	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	2e-25	cytokinin response factor 4

Link Out ? help Back to Top
Phytozome	Prupe.3G019900.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]