PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G014900.2.p
Common NamePRUPE_ppa005083mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 483aa    MW: 52821.6 Da    PI: 6.0458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G014900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-175296147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  Prupe.3G014900.2.p 52 RERWTEEEHKKFLEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 96
                        78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1746100IPR009057Homeodomain-like
PROSITE profilePS5129421.73347101IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-94998IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-175099IPR006447Myb domain, plants
SMARTSM007171.2E-135199IPR001005SANT/Myb domain
PfamPF002493.0E-145295IPR001005SANT/Myb domain
CDDcd001677.22E-115497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDQYDGSRSE SVLSANNGFS FSASGLQLKD QFSNGNDSAP KARKPYTITK QRERWTEEEH  60
KKFLEALKLY GRAWRKIEEH VGTKTAVQIR SHAQKFFSKV ARDSNGSNEI SEEPIDIPPP  120
RPKRKPMRPY PRKLVHPVNK ETFIVERPTR SASPNLSVSE PENQSPTSVL SVIGSDTLGS  180
ADSNTPSRSL SPVSSAADVH GVDLNQSEPP NPSLEESGST SPAVAENGSL PNVQLSMKLE  240
LFPTDNVDAS GVSSEEVSAR SLKLFGRTVL VTDSHRPSSP TLGTSKSLPS DVKEEKPVQI  300
STPCNFTATE SASGSVEHVW DNFPYGVHPG MYFMQFQNQN SNLVEPGSAY PVPWWTLCPK  360
LPFPFIPFHK PQAVKEHFDG NLGDPKEVEK EGSWTGSDAG SVNDEENGDK CLGIETEGKE  420
QEPNSVLQFK ASANSAFSEL RASPSPGKCR KGFVPYKRCL AERDTSTIAS EDRDGKRVDL  480
SL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.27110.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G014900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414758.10.0protein REVEILLE 1 isoform X2
TrEMBLA0A251PTM50.0A0A251PTM5_PRUPE; Uncharacterized protein
STRINGEMJ165030.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-69MYB_related family protein