![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.3G008600.2.p | ||||||||
Common Name | PRUPE_ppa008731mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 255aa MW: 28357.6 Da PI: 8.698 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 109.2 | 2e-34 | 99 | 156 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts+ C+vkk+vers +dp++v++tYeg+H+h+ Prupe.3G008600.2.p 99 EDGYRWRKYGQKAVKNSPFPRSYYRCTSTACNVKKRVERSFNDPSIVVTTYEGQHTHP 156 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 4.6E-102 | 7 | 254 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 2.0E-35 | 83 | 158 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-29 | 90 | 158 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.869 | 93 | 158 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-40 | 98 | 157 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-27 | 99 | 156 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MLPSLAPNFP KTSIMAKECS DYSLNQQPAT PNSSSISSAS SEALNEEQTD NKGAADQDEE 60 EEHDQPKTKK ELKAKKASQK RQREPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPFPRS 120 YYRCTSTACN VKKRVERSFN DPSIVVTTYE GQHTHPSPLI PRPTLTASAS AQPNISTTFA 180 MPSMPRTLLS HHYQQQLQPF NFCNYVNGGS PTANASGTGF HSERRFCTPA TGSAMLTDHG 240 LLQDIVPSHM LKQE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-26 | 91 | 158 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-26 | 91 | 158 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.3G008600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX112911 | 1e-113 | JX112911.1 Malus hupehensis WRKY transcription factor 23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007221490.1 | 0.0 | probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 5e-71 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A251PT77 | 0.0 | A0A251PT77_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22689 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47260.1 | 4e-64 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.3G008600.2.p |
Entrez Gene | 18788001 |
Publications ? help Back to Top | |||
---|---|---|---|
|