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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G320600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 545aa MW: 60887.1 Da PI: 4.6234 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.1 | 1.4e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp GfrF+Ptdeel+++yL+ k++g++ ++ +vi+e+d++k+ePwdLp + +++++ ew+fF+++d+ky++g+r nrat +gyWkatgkd Prupe.2G320600.1.p 14 LPLGFRFRPTDEELIDYYLRSKINGNHKQV-TVIREIDVCKWEPWDLPdlSVIQTTDPEWFFFCPQDRKYPNGHRLNRATGKGYWKATGKD 103 699************************999.99**************96447778888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s + l+g+kktLvf++grapkg++t+Wvmheyr Prupe.2G320600.1.p 104 RQIKS-ATILIGMKKTLVFHTGRAPKGKRTNWVMHEYRT 141 *****.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-60 | 7 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.984 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002230 | Biological Process | positive regulation of defense response to virus by host | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MLVVDMAVLS TNTLPLGFRF RPTDEELIDY YLRSKINGNH KQVTVIREID VCKWEPWDLP 60 DLSVIQTTDP EWFFFCPQDR KYPNGHRLNR ATGKGYWKAT GKDRQIKSAT ILIGMKKTLV 120 FHTGRAPKGK RTNWVMHEYR TTQKELDGTN PGQNPFVLCR LFKKQDETID DSNFAEVEPA 180 VSSSTAAISS PQDTQSDHAL GPTSPSFERL DEKPTKVECT IADYSNGMEP DTLQPVECPS 240 NTYNGYDAED QLNVPLEGLD MFYDPPQQPL FSPLHSQMQT ELYYCGSNNF NNGHQGVKIQ 300 YGTNDQDADI SEFLSSIFNS SGEHSDVDAF VAVPCETELQ NPVQSEGNID RKGPVQNEST 360 QIDCFLTGDA GTGIRLRTRE TQNPTSTENF ARQGDAPRRL RLQRKFEVLH CCNLSKDWNC 420 RPEDQETKPM AVEEIRDTEE KAIDAAVSDV VDAAVSDAVD AATDPPKKET MSTRLNFTPE 480 GSILTGERVP NAILQGSPAG HSMWSFAFLF RVVVVVAFLF IMLLAYGDFI SFEAAGSPLT 540 VRMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-46 | 9 | 165 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-46 | 9 | 165 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-46 | 9 | 165 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-46 | 9 | 165 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-46 | 9 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-46 | 9 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-46 | 9 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-46 | 9 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-46 | 9 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-46 | 9 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-46 | 9 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-46 | 9 | 165 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 7e-46 | 9 | 165 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-46 | 9 | 165 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.14676 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G320600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020412062.1 | 0.0 | NAC domain-containing protein 91 | ||||
Swissprot | Q9LKG8 | 1e-111 | NAC91_ARATH; NAC domain-containing protein 91 | ||||
TrEMBL | A0A251QPX4 | 0.0 | A0A251QPX4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234624.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 1e-113 | TCV-interacting protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G320600.1.p |
Publications ? help Back to Top | |||
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