PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 1010aa MW: 113385 Da PI: 7.8064

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G286400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.6	1.5e-08	242	300	22	81
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++ + e++ +y Prupe.2G286400.1.p 242 TRSKTRADKDREVAEFLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQV-GKSY 300 56788889999*************************************9755444.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	3.71E-15	826	990	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	7.7E-7	855	994	No hit	No description
CDD	cd00180	2.03E-12	861	990	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1010 aa Download sequence Send to blast
MGDNKGDTSK KQPQQQQTQQ QQQISPSPND PLEDQLLPTE ITRPRHHQPQ PPPAAAPFNI 60 PAPLFVPSGA ATSSSSPFDQ QHFEAAVNPK RPRYTTGQWK LLPSPSSQTK QTQIPILAKE 120 STPSPNPKST QLPQPHVTPT GAASSSDTAS SPPAHSPLPS LSATSGQDTN KTEGDLQNPV 180 HNHQFRKGKY VSPVWKPNEM LWLARGWRIQ YQGGPAGGSS DHGSGSSSRT EQIPTETGTP 240 HTRSKTRADK DREVAEFLQK HGVNRDAKTA GTKWDNMLGE FRKVYEWERG AEREQVGKSY 300 FRLSPYERKL HRLPASFDEE VFEELSQFMG SRMRTPQSRL GSVGDDSRSA FVVTRSLTQP 360 PSFKEDEFPP SGSKKQLMIM SGGGEPFYHG GRGTLLGFHH HDQSSLDFTA GLSSSSASKE 420 LRRIGKIRMT WEELVSLWAE EGEHHRGRVR LQGSSFLNAD ELTFFDDSMV ACTMEAFEDG 480 PLRGFSVDRF VSGQVVKVFG RRKPSSSTSG FNEKVQLSLP ESASRSIPST EFQDPTEYYV 540 GCLGAPPPSL PSLPELQWYL QEPPPEELRF PLRKDVYRDL PQGKEIFFTT STELLDCRAI 600 TYDILSPIIR TNPSLSASTA TSRDSFIPIW DDCINRLVSK FCSLEMVFIR RPNASSPTEP 660 LQDQWPNVTG FVRSFCLWRG EETDQLRDSH DMNPSSSIVE KILWTYMDLP YIFGYYAIGY 720 VVTFCALSRS QDRINRTDLA TIDLSSPSER LKALLPCYRI AGLLPLLADR CFNNTNCNKL 780 LPHSDFERLD LGNGRNIVEM TPTTVTRFFS NVRKWTAVKE IYDFLDHRIP HAEYIHRSLE 840 RDLGLVFKPR GCKCKPTNCE QLVEALKYVT KALVALHDLS FMHRDISWEK VMRRTERENE 900 WFVCGFEEAV GAPQIYPRRA VAAGESAARV RHAPEMERGL HGVKVDVWGV GYLVRNCGLT 960 GVPKMLRELQ NRCLDQNPEQ RPTAADCYHH LLQLQSSLQS ATAGCVLGR*

Sequence ? help Back to Top

Protein Sequence Length: 1010 aa Download sequence Send to blast

MGDNKGDTSK KQPQQQQTQQ QQQISPSPND PLEDQLLPTE ITRPRHHQPQ PPPAAAPFNI  60
PAPLFVPSGA ATSSSSPFDQ QHFEAAVNPK RPRYTTGQWK LLPSPSSQTK QTQIPILAKE  120
STPSPNPKST QLPQPHVTPT GAASSSDTAS SPPAHSPLPS LSATSGQDTN KTEGDLQNPV  180
HNHQFRKGKY VSPVWKPNEM LWLARGWRIQ YQGGPAGGSS DHGSGSSSRT EQIPTETGTP  240
HTRSKTRADK DREVAEFLQK HGVNRDAKTA GTKWDNMLGE FRKVYEWERG AEREQVGKSY  300
FRLSPYERKL HRLPASFDEE VFEELSQFMG SRMRTPQSRL GSVGDDSRSA FVVTRSLTQP  360
PSFKEDEFPP SGSKKQLMIM SGGGEPFYHG GRGTLLGFHH HDQSSLDFTA GLSSSSASKE  420
LRRIGKIRMT WEELVSLWAE EGEHHRGRVR LQGSSFLNAD ELTFFDDSMV ACTMEAFEDG  480
PLRGFSVDRF VSGQVVKVFG RRKPSSSTSG FNEKVQLSLP ESASRSIPST EFQDPTEYYV  540
GCLGAPPPSL PSLPELQWYL QEPPPEELRF PLRKDVYRDL PQGKEIFFTT STELLDCRAI  600
TYDILSPIIR TNPSLSASTA TSRDSFIPIW DDCINRLVSK FCSLEMVFIR RPNASSPTEP  660
LQDQWPNVTG FVRSFCLWRG EETDQLRDSH DMNPSSSIVE KILWTYMDLP YIFGYYAIGY  720
VVTFCALSRS QDRINRTDLA TIDLSSPSER LKALLPCYRI AGLLPLLADR CFNNTNCNKL  780
LPHSDFERLD LGNGRNIVEM TPTTVTRFFS NVRKWTAVKE IYDFLDHRIP HAEYIHRSLE  840
RDLGLVFKPR GCKCKPTNCE QLVEALKYVT KALVALHDLS FMHRDISWEK VMRRTERENE  900
WFVCGFEEAV GAPQIYPRRA VAAGESAARV RHAPEMERGL HGVKVDVWGV GYLVRNCGLT  960
GVPKMLRELQ NRCLDQNPEQ RPTAADCYHH LLQLQSSLQS ATAGCVLGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G286400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020412049.1	0.0	uncharacterized protein LOC18786487
TrEMBL	A0A251QMY8	0.0	A0A251QMY8_PRUPE; Uncharacterized protein
STRING	XP_008234479.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-08	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Prupe.2G286400.1.p
Entrez Gene	18786487