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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Prupe.2G285900.3.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 255aa MW: 28324.5 Da PI: 10.096 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 36.7 | 7.4e-12 | 68 | 118 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++h e+Er+RR+++ + + Lr+llP + ++K s ++ +Av+YIk+Lq
Prupe.2G285900.3.p 68 MMHRENERQRRQEMGTLHASLRSLLPLEF--IKGKRSISDHMNEAVNYIKHLQ 118
68*************************65..*********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 7.11E-9 | 63 | 122 | No hit | No description |
| SuperFamily | SSF47459 | 3.93E-12 | 64 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 12.97 | 65 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.4E-9 | 68 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 4.2E-8 | 69 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 0.002 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 255 aa Download sequence Send to blast |
MMFPLHQGKK LVFQTSSNPP QKHTISEDRI LGHAISTGKS RRRKLVAAFN YDMIDQNSND 60 HNKKKKMMMH RENERQRRQE MGTLHASLRS LLPLEFIKGK RSISDHMNEA VNYIKHLQSR 120 IKRLDAKRAE LKKCSNIIST TGTDHGATPG SSDGRSPSCL TVHPCCGGVQ IVISSRGFRS 180 SKDGLSLSFS ISRVLEVLLE QGLAVVSCVS SKGNDRLLHT IQCEVNDLES IDLSGLEQKL 240 AELVSPFSSR CISE* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Prupe.2G285900.3.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020412653.1 | 0.0 | transcription factor bHLH36 isoform X2 | ||||
| TrEMBL | A0A251QP09 | 0.0 | A0A251QP09_PRUPE; Uncharacterized protein | ||||
| STRING | XP_008234326.1 | 0.0 | (Prunus mume) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G25410.1 | 4e-47 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Prupe.2G285900.3.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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