PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G271900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 354aa    MW: 38643.7 Da    PI: 10.0614
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G271900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14104148347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++ + k+lG+g+W+ Iar + ++Rt+ q+ s+ qky
  Prupe.2G271900.1.p 104 PWTEEEHRVFLAGLKKLGKGDWRGIARNFVTTRTPTQVASHAQKY 148
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129421.43597153IPR017930Myb domain
SuperFamilySSF466893.52E-1799153IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-18100152IPR006447Myb domain, plants
SMARTSM007171.5E-11101151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-12101147IPR009057Homeodomain-like
PfamPF002492.3E-11104148IPR001005SANT/Myb domain
CDDcd001676.27E-10104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVKESMRKCS HCGHNGHNSR TCNNNGHGHG QNKGVCLKLF GVNIMEKEDD SMKKSYSMGN  60
LQAAGNADHN NNVVTIDHDA GYLSDGLIHN KKHKAAHERK KGRPWTEEEH RVFLAGLKKL  120
GKGDWRGIAR NFVTTRTPTQ VASHAQKYFL RQATYDKRKR RSSLFDMQFK ELSMDLQDQG  180
HQDSPISPTR TATETSSEGS SSKVLPQKIN TANSSPPKAS VPSQILNRFP HLCLDSPPAA  240
PVSPPCNVPN YPAVSYMMGI PENVPYTPMM HFARPSYHYM IKTHGNFATC APVISHPSGI  300
PSPRSLPSSP SMAGRIGMSS PAEKDALELK IGQPQPSQGA NLSSPTSGAI RVT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G271900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234449.10.0PREDICTED: transcription factor MYB1R1 isoform X1
TrEMBLA0A251QMD10.0A0A251QMD1_PRUPE; Uncharacterized protein
STRINGXP_008234449.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.18e-65MYB_related family protein