PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G253300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 190aa    MW: 20406.2 Da    PI: 7.337
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G253300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601292e-40141131100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+l+rkC++ C++apyf  ++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l+
  Prupe.2G253300.1.p  14 SCAACKLLKRKCSPTCIFAPYFLPDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIAMLQRKMIELQ 104
                         6****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++la ++++
  Prupe.2G253300.1.p 105 HDLAIARAR 113
                         ***999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.39713114IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-4014111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNMKGSHEPR SSSSCAACKL LKRKCSPTCI FAPYFLPDEP KKFAKVHKVF GASNVSKILT  60
EVPEEQREDT VNSLAYEAEA RLRDPVYGCI GAIAMLQRKM IELQHDLAIA RARLACYASN  120
SLSSSSTTAS ASSCYGVLDD QLSEAAFSAV GFPACSGFSN SFMSQSAPEL ISHSQHGQTS  180
DFSCAPYIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-4991276124LOB family transfactor Ramosa2.1
5ly0_B9e-4991276124LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G253300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413423.11e-138LOB domain-containing protein 21
SwissprotQ9SRL81e-61LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A251QLG91e-136A0A251QLG9_PRUPE; Uncharacterized protein
STRINGXP_008233787.11e-127(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.18e-63LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]