PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G252600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 30392.9 Da PI: 8.3499 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.1 | 7.8e-14 | 84 | 130 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++++k+L Prupe.2G252600.1.p 84 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 130 79*************************8.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 81 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-13 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-11 | 84 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-15 | 84 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.16E-11 | 84 | 133 | No hit | No description |
SMART | SM00353 | 8.6E-12 | 87 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 3.60E-5 | 182 | 247 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MESMVLEKCW LFLAMENCYC AGPQGATWAP YNSAALSNES SSFPLPWPPH ASSSTQFQFC 60 GFPNSWSATA EGADEEDRAA TASKSHSQAE KRRRDRINAQ LATLRKLIPK SDKMDKAALL 120 GSVIDHVKDL KRKAMEVSKA FMVPTEMDEI TIDSDPAQAA ANSGSNNINM NKSRCSIVIR 180 ASVCCDDRPE LFSELIQVLK GLKLTAVRAD MASVGGRIKS VLVLCKDGEE DEALCISTLK 240 QSLKLVLSKI CASSMAPNCR IRSKRQRFFL PFQYPN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G252600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689420 | 0.0 | KP689420.1 Prunus pseudocerasus isolate Unigene9695 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218826.2 | 0.0 | transcription factor bHLH51 | ||||
TrEMBL | A0A251QLE2 | 0.0 | A0A251QLE2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008233781.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 3e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G252600.1.p |