PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G251000.1.p
Common NamePRUPE_ppa002415mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 676aa    MW: 74160.4 Da    PI: 8.1739
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G251000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06267287526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd C +aHg
  Prupe.2G251000.1.p 267 PCPEFRK-GSCQKGDVCEYAHG 287
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.0E-1724172IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.37E-1626146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.46769178IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.6566993IPR002110Ankyrin repeat
PfamPF127961.4E-869136IPR020683Ankyrin repeat-containing domain
SMARTSM002484.9E-46999IPR002110Ankyrin repeat
CDDcd002042.17E-1471167No hitNo description
PROSITE profilePS5008810.018104139IPR002110Ankyrin repeat
SMARTSM002480.011104136IPR002110Ankyrin repeat
PROSITE profilePS5010312.108262289IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4262288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4267288IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.216297321IPR000571Zinc finger, CCCH-type
SMARTSM0035618297320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MCKGSKDKLS PSNFTMESGF PKQNSVLVEL SASDNLDAFR SEVQEKGFHV DEAGFWYGRR  60
IGSKKMGFEE RTPLMIAAMF GSTKVLKYII QSGKADVNRS CGSDKVTALH CATAGGSTAS  120
LEVVKLLLDA SADANCVNAN GNKPIDLIAP ALKSPCSSRR KTMEMLLKGD MSVMESDQIA  180
NQEGDQQKFP SPQLSKDGSE KKEYPIDISL PDINNGIYGT DEFRMYTFKV KPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK YPYSCVPCPE FRKGSCQKGD VCEYAHGVFE SWLHPAQYRT  300
RLCKDETGCT RKVCFFAHRP EELRPVYAST GSAMPSPRSM SVSAADMASP LALGSSPMSQ  360
PTTSTPPMSP LATSSSPKNG ALWQNKLNLT PPALQLPGSR LKSALSARDL DLEMELLGLD  420
SHSSQQQKHQ HQQQQQQQLW DEISRLSSPK CYNNDFSRIG ELKPTNLDDA FGSFDPSLLS  480
QLQGVSLKPS TPTQLQSSAH QIRQNMNQLR SSYPTNLSSS PVRKPSSFGL DSPGALAAAV  540
MNSRSAAFAQ RSHSFIDRGA MSHPHGLTAP ANSSTMMQSS DWGSPGGKLD WGIQGDELNK  600
LKKSASFGFR SNNAGTPATF MPSAVGEPDV SWVNSLVRDV SSERSEQKYH HLNKGVHEML  660
PPWAEQMYIE QEQRA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.35760.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G251000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220214.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLM5XIS20.0M5XIS2_PRUPE; Uncharacterized protein
STRINGEMJ214130.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein