PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G238900.1.p
Common NamePRUPE_ppa018815mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 224aa    MW: 25228.3 Da    PI: 4.6351
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G238900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601216.5e-3871071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+ +Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+++ i++lqqq+  l
  Prupe.2G238900.1.p   7 SCGACKFLRRKCTGECVFAPYFCYDQaADHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITMSYEALARMRDPVYGCFSQIFALQQQVVYL 97 
                         6************************9789************************************************************** PP

              DUF260  91 kaelallkee 100
                         ++e+++l+++
  Prupe.2G238900.1.p  98 QEEIETLGNQ 107
                         *****99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6876108IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-367104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTGFGSSCGA CKFLRRKCTG ECVFAPYFCY DQAADHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITMSY EALARMRDPV YGCFSQIFAL QQQVVYLQEE IETLGNQMVN FATGHSSNSF  120
SELQVFSQHD AVETQYLQSQ LPEPLLLPVM ENATANQAFN SQMDIQMLPL HEWEEVNLFG  180
DQSVPDPLER FLEGPQENLG HNPWLNETAN TRNYNKGSRW DLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3531277130LOB family transfactor Ramosa2.1
5ly0_B2e-3531277130LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G238900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221130.11e-169LOB domain-containing protein 33
SwissprotQ9LHS85e-56LBD33_ARATH; LOB domain-containing protein 33
TrEMBLM5X8P11e-167M5X8P1_PRUPE; Uncharacterized protein
STRINGEMJ223291e-168(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-58LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]