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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Prupe.2G218000.1.p |
Common Name | PRUPE_ppa023989mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
LBD |
Protein Properties |
Length: 232aa MW: 25186.8 Da PI: 6.7195 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.2G218000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 133.3 | 9.8e-42 | 76 | 175 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+++++l+
Prupe.2G218000.1.p 76 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQKHVSELQ 166
7****************************************************************************************** PP
DUF260 92 aelallkee 100
a+la++++e
Prupe.2G218000.1.p 167 AQLAKTQAE 175
*****9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MEFNTSTPSA SSPPLSISQL SSPTASFPSP NNSLQLSNLS SPNYAVKNNI NTNVNNPTSP 60 SPPPPPPPPP PVVLSPCAAC KILRRRCAEK CVLAPYFPPT EPLKFTIAHR VFGASNIIKL 120 LQELPESHRA DAVSSMVYEA NARIRDPVYG CAGAICQLQK HVSELQAQLA KTQAELLNMQ 180 CQQGNLIALI CMDMTQSKDP ILQQQQQQSY LDTSCFLDET NLGTAWEPLW T*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |