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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G202700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 44837.3 Da PI: 4.3494 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.5 | 2.4e-44 | 14 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.....eekewyfFskrdkkyatgkrknratksgyWka 85 +p GfrFhPt+eelv++yLk+k +++++++ ++i+e+di+k++Pw++p ++++ ++ ew+fFs rd ky++++r+nrat +g Wk Prupe.2G202700.3.p 14 MPLGFRFHPTEEELVDYYLKNKRQDRDFNV-NHIPEIDICKYDPWEIPgLMFTEqdspyHDMEWFFFSLRDYKYTNSNRSNRATPHGSWKI 103 699***************************.88***************54333323344667***************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tgk++ + ++ +++++g+k+t++fy+ pk++kt+Wvmhey+l Prupe.2G202700.3.p 104 TGKERMIRARgSNAVIGTKRTMTFYERGVPKSKKTNWVMHEYNL 147 *********9666779**************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-50 | 13 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.746 | 14 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-24 | 15 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MGSKCYRKTE GDPMPLGFRF HPTEEELVDY YLKNKRQDRD FNVNHIPEID ICKYDPWEIP 60 GLMFTEQDSP YHDMEWFFFS LRDYKYTNSN RSNRATPHGS WKITGKERMI RARGSNAVIG 120 TKRTMTFYER GVPKSKKTNW VMHEYNLFES EASPDPQLAE RDFVLCRTKK NPDKKDTSVF 180 AEGEPSSYNL YNCEDEAAAD VTPESQDHSP STLQSPAYIE LGDVLQVNVL HEDCKDMQSP 240 FGDNDYSVTD KNYFSTFDEG EPHGFTVSDI ENEVACDMSQ EAQDYYSFTL PSPIYSELGS 300 VPHFDVYNNE WKSTYANFEN QTTDERISEE CPQPKENLRS ILSASQLEDY TSQTLMDTEE 360 YQMRPCEIGR EGAAGMNWEG SFFNIFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-34 | 14 | 171 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-34 | 14 | 171 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-34 | 14 | 171 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-34 | 14 | 171 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-34 | 14 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-34 | 14 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-34 | 14 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-34 | 14 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-34 | 14 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-34 | 14 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-34 | 14 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-34 | 14 | 171 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-34 | 14 | 171 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-34 | 14 | 171 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G202700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020411932.1 | 0.0 | NAC domain-containing protein 83 isoform X5 | ||||
TrEMBL | A0A251QIN2 | 0.0 | A0A251QIN2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244181.1 | 1e-144 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 7e-46 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G202700.3.p |