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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G201600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 35729.1 Da PI: 5.7001 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.3 | 8.2e-29 | 18 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l pG++F+Ptd+el+++yLkkk++g++ e++++++e+++ ++eP+dLp +fFs+ d +++g+ r+t++g+ k+tgk + Prupe.2G201600.1.p 18 LLPGIKFSPTDKELLSFYLKKKIAGEDSEFSNIMPEINLREHEPRDLP--------TEFFFSEPDYMSPNGDSCYRTTNRGFYKSTGKPRG 100 579***************************999**************9........359******************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +++++g k+ + fy+grap+ + t+ v+h+++l Prupe.2G201600.1.p 101 IEDElSKAVIGEKRYMPFYEGRAPEHKLTEYVLHQFSL 138 **9988899***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-30 | 15 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.137 | 18 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-13 | 20 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGSGGGTTDE RVSVPMGLLP GIKFSPTDKE LLSFYLKKKI AGEDSEFSNI MPEINLREHE 60 PRDLPTEFFF SEPDYMSPNG DSCYRTTNRG FYKSTGKPRG IEDELSKAVI GEKRYMPFYE 120 GRAPEHKLTE YVLHQFSLTK TELAKLAPNR EFVLNHLTIK KGSTKARNPK PNYKKRKYDS 180 NCDKLAERGI PGYIASNYKD DQAAAAANMI PEPEEHLAVE DVLLGSENRN ECAESESANG 240 SRLINNNDSS TLAVGSPGGC FPSGYGNVAA NDPFREVSFQ PEGNLISPFH PSSLRDIPLR 300 SPVHTGLLED VVCVNNSILI GMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-16 | 2 | 138 | 1 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-16 | 2 | 138 | 1 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-16 | 2 | 138 | 1 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-16 | 2 | 138 | 1 | 142 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-16 | 2 | 138 | 1 | 142 | NAC domain-containing protein 19 |
4dul_B | 4e-16 | 2 | 138 | 1 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 176 | PKPNYKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G201600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020413550.1 | 0.0 | NAC domain-containing protein 60 | ||||
TrEMBL | A0A251QIK6 | 0.0 | A0A251QIK6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20587 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39932 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 6e-27 | NAC domain containing protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G201600.1.p |