PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G195300.2.p | ||||||||
Common Name | PRUPE_ppa004680mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 497aa MW: 55192.8 Da PI: 5.2525 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.7e-12 | 321 | 366 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Prupe.2G195300.2.p 321 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 366 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.7E-51 | 25 | 217 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.015 | 317 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-18 | 318 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.01E-14 | 320 | 370 | No hit | No description |
Pfam | PF00010 | 7.3E-10 | 321 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-17 | 321 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-16 | 323 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MEELIISPSS SSSLVSLPQE TSPSLQQRLQ FIVQSQPDWW SYAIFWQPSN DHQDNGRLFL 60 TWGDGHFQGS KDPSAKHHNN PYGILSERRK ILKGIQSLIN DNNPDHHQDS IMDHMGLDAD 120 VSDGEWFYVM SLARSFSIGE TTISASVPGK AFSSGSVVWL TGSHELQFYN CDRAKEAQMH 180 GFQTLVCIPT PTGVLEMGSS DSIRENWSLV QQAKSLFGSD LICSVADQPD PETRSPIDFI 240 NRNFSFADIG IIAGVEEEED DKKEVALDLT MMKRKGGNPG TGLYPDSNAN PKPDYSDSDG 300 PKRTPKKRGR KPGLGRDTPL NHVEAERQRR EKLNHRFYAL RAVVPNVSRM DKASLLSDAV 360 SYINELKTKV DELESQVQRE SKKVKVETGD NLDIQSTTTS VEQIAKPPSS SANGSGLEVE 420 VKIVGTDAMI RVQSENVNYP SARLMAALRD LELQIHHASL SCINELMLQD IVLKVPENMR 480 SEDSLKSALL RILDQN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-33 | 18 | 217 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-33 | 18 | 217 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-33 | 18 | 217 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-33 | 18 | 217 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G195300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219048.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | M5X2D4 | 0.0 | M5X2D4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20247 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46830.1 | 2e-71 | NACL-inducible gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G195300.2.p |
Entrez Gene | 18785599 |